BO27580.complete Sequence
757 bp assembled on 2010-08-18
GenBank Submission: KX797369
> BO27580.complete
GAAGTTATCAGTCGACATGGCATGGGTTCCCAATTCGCAGTTCGAGGATG
ATCTGGTCGACATGGAGCCGGATTTCAATTTTGTCCATGGTCAACTGGCC
TACGACATGAAGAAGCAAGGGGAGTTTTGGCCGCGACCGAAATGCACATA
TGAATATCTGAAGTCCCGGGAAAAGAGGAATTCCGAGCTCGAAAATATCC
ATGGAAGCAGAGGCGGAACTGGTCGTGATATTCGGCAAAGCCTTCAGCTA
ATGGAGAACATACAGAAGATAGCAGGCACAAGGCCGCTGGGCGAGCACGC
CACTATGAAAGATTGGGAGGATGAAAGCACAAATGAGCTAGAGGCGTTAG
CCATGATGCGTCACTTCGGAATGATGTCCATGGCAACAGATTCGCTGCCC
GTTCTGCCCGAAGTAAAACCACCAGAAGGACCCATTAAAATTATAAGAAA
CGGACGGAAACAATTTCCCCTCATCACAGACCCCGAATTTTTTAAACCAC
GCAAGATTCCCCGAACGAAGAATTCCAGTTCCAGTAGTTCGTATCATACT
GCCAATAGTTCAATCAGTTCCTTCAGCCTTTATGAATCTGCCGCTTCAGA
TTTGGACAGCAGCAAGAAGCAGGGCGAGATCAAGGCGTCAAAGTCGGAGA
AATACCTCGAAGTACCTTACAAACAGCTTGCGGAGAGTTACGACCAGGAA
GTGGAATCACCAGTCCAATTTGGAAACCAATTCAATGAAGCAAGCTTTCT
AGACCAT
BO27580.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:39:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| squ-RC | 726 | CG4711-PC | 1..723 | 17..739 | 3615 | 100 | Plus |
| squ-RB | 726 | CG4711-PB | 1..723 | 17..739 | 3615 | 100 | Plus |
| squ-RA | 726 | CG4711-PA | 1..723 | 17..739 | 3615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:39:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| squ-RC | 1171 | CG4711-RC | 236..959 | 16..739 | 3620 | 100 | Plus |
| squ-RB | 1029 | CG4711-RB | 94..817 | 16..739 | 3620 | 100 | Plus |
| squ-RA | 1372 | CG4711-RA | 437..1160 | 16..739 | 3620 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:39:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16680718..16681441 | 16..739 | 3620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:39:18 has no hits.
BO27580.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:55:21 Download gff for
BO27580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| squ-RA | 436..1158 | 17..741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:00 Download gff for
BO27580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| squ-RA | 438..1160 | 17..741 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:15:50 Download gff for
BO27580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| squ-RA | 438..1160 | 17..741 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:15:50 Download gff for
BO27580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16680719..16681441 | 17..741 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:00 Download gff for
BO27580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16680719..16681441 | 17..741 | 99 | | Plus |
BO27580.pep Sequence
Translation from 16 to 757
> BO27580.pep
MAWVPNSQFEDDLVDMEPDFNFVHGQLAYDMKKQGEFWPRPKCTYEYLKS
REKRNSELENIHGSRGGTGRDIRQSLQLMENIQKIAGTRPLGEHATMKDW
EDESTNELEALAMMRHFGMMSMATDSLPVLPEVKPPEGPIKIIRNGRKQF
PLITDPEFFKPRKIPRTKNSSSSSSYHTANSSISSFSLYESAASDLDSSK
KQGEIKASKSEKYLEVPYKQLAESYDQEVESPVQFGNQFNEASFLDH
BO27580.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:14:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| squ-PC | 241 | CG4711-PC | 1..241 | 1..241 | 1264 | 100 | Plus |
| squ-PB | 241 | CG4711-PB | 1..241 | 1..241 | 1264 | 100 | Plus |
| squ-PA | 241 | CG4711-PA | 1..241 | 1..241 | 1264 | 100 | Plus |
| CG15484-PA | 206 | CG15484-PA | 1..182 | 1..181 | 457 | 49.7 | Plus |
