BO27581.complete Sequence
1318 bp assembled on 2010-08-18
GenBank Submission: KX798904
> BO27581.complete
GAAGTTATCAGTCGACATGAGTGGAGAGGAGGAGTACTTCCAGGAGGAGG
AAGAAGAGGAGCAGGAGCAGGATATTTACGACGATGGCACGGAATACACC
GAACCGGGTGCCCAGAAGGTAGACAAGCCGTCAAAGGACGAGAAGAACGT
GGCCAAGTGGCTGAAGAAGAACGTTAAGACGAAGAAGACCAAATTCCTGA
GCCACATCGTCGAATACTTCACCTCCAGCAAGGCCATCGATGCTCTGCTA
AAGTCCAAATTCACCGAAGGCAGCAATCCGCTTTTCACCACCCGGGAGCA
GGTAATCGAGTTTCTAGACGTGATGCTGGAGCACAAGTTCTTCCATCGCG
CCAAGAAGGTGCCCGTCACTCTGGAGGAGATCAGAGGAAAGTCTGGAGGC
GACAAGAAGGCGGACAAGGAGAAGACCCAAGATAAGGAAAAGGACAAGGC
AAAGGATGAGAAGAAGGATACCGATCCGGAAGGCGATAATGGCCAAGGAG
ACGGAGGTGCGTCTGGCAACGAAAAAGAGAAGGAGAAAAAGGAGAAGAAA
AAGCGCAAGATCCGCCTGGACATGCATCCTGAGCAGATCTTCGTGGACGG
CTCCGAGGCATACGTCTGGATCTACGATCCCATACCGCTCCACTACTGGA
TATTCGGCTTCATCCTGCTACTTGGCGCCGTTGGCATTTGCCTATTCCCT
CTGTGGCCTCCACTGCTACGCAAGGGTGTCTACTACTTGTCCATTGCGGC
TGCCGGCTTCCTTGTTTTCATCCTGGCTCTGACAATTGTACGTCTAATTG
TGTTCATCATCGTGTGGGCATTAACCGGCGGCAAGTTGCACTTCTGGATC
TTCCCCAACCTGACTGAGGATGTGAGCTTCTTCGCCTCCTTCTGGCCACT
ATATGAGAGCAACTATAACAGTGACCCAAATAATTCGTCCGCCAAGACCG
ACAAGAAATCGAAATCGAAGGACAAGAAGAAGGAAAAAGAAAGCGATGCC
GAGGACACAGCCGTGGATGCGGATGGAGACGCTGACGGTGATGTGGATGC
TGAGGTTTCCACGCTTGAACCAGAGAAAATCGAGCTCATCAAAGAACATG
ACACCGACATGGAGATCCGCAAACGTCGCAAAGTGGGTGCCGATGACTAC
GAGGAAGACGATGTGGATGAAGAAGAAACGAAGGCGCAGCCCAAGGATTC
CAAAGCTGGAACGCCACGCAACTCGGGATCGGATTCGGAGAGCTCGAGTA
AAGATTACGAGATAATCAGTTCAAGTGAAGTCCAAAACGTTGCTGGCAAC
GCAAGCTTTCTAGACCAT
BO27581.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:39:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trp1-RB | 1287 | CG4758-PB | 1..1284 | 17..1300 | 6420 | 100 | Plus |
| Trp1-RA | 1248 | CG4758-PA | 37..1245 | 92..1300 | 6045 | 100 | Plus |
| Trp1-RC | 1197 | CG4758-PC | 1..1193 | 17..1209 | 5965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:39:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trp1-RB | 2093 | CG4758-RB | 130..1413 | 17..1300 | 6420 | 100 | Plus |
| Trp1-RA | 2045 | CG4758-RA | 157..1365 | 92..1300 | 6045 | 100 | Plus |
| Trp1-RC | 1532 | CG4758-RC | 130..1322 | 17..1209 | 5965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:39:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10010736..10011552 | 91..907 | 4085 | 100 | Plus |
| 2L | 23513712 | 2L | 10011605..10011908 | 906..1209 | 1520 | 100 | Plus |
| 2L | 23513712 | 2L | 10012399..10012490 | 1209..1300 | 460 | 100 | Plus |
| 2L | 23513712 | 2L | 10010483..10010558 | 17..92 | 380 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:39:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TAHRE | 10463 | TAHRE OSV 10463bp | 6452..6494 | 951..992 | 113 | 76.7 | Plus |
BO27581.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:55:20 Download gff for
BO27581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trp1-RB | 124..1407 | 17..1302 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:18:57 Download gff for
BO27581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trp1-RB | 130..1413 | 17..1302 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:15:48 Download gff for
BO27581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trp1-RB | 130..1413 | 17..1302 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:15:48 Download gff for
BO27581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10011607..10011908 | 908..1209 | 100 | -> | Plus |
| 2L | 10012400..10012490 | 1210..1302 | 97 | | Plus |
| 2L | 10010483..10010557 | 17..91 | 100 | -> | Plus |
| 2L | 10010737..10011552 | 92..907 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:18:57 Download gff for
BO27581.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10010483..10010557 | 17..91 | 100 | -> | Plus |
| arm_2L | 10010737..10011552 | 92..907 | 100 | -> | Plus |
| arm_2L | 10011607..10011908 | 908..1209 | 100 | -> | Plus |
| arm_2L | 10012400..10012490 | 1210..1302 | 97 | | Plus |
BO27581.pep Sequence
Translation from 16 to 1318
> BO27581.pep
MSGEEEYFQEEEEEEQEQDIYDDGTEYTEPGAQKVDKPSKDEKNVAKWLK
KNVKTKKTKFLSHIVEYFTSSKAIDALLKSKFTEGSNPLFTTREQVIEFL
DVMLEHKFFHRAKKVPVTLEEIRGKSGGDKKADKEKTQDKEKDKAKDEKK
DTDPEGDNGQGDGGASGNEKEKEKKEKKKRKIRLDMHPEQIFVDGSEAYV
WIYDPIPLHYWIFGFILLLGAVGICLFPLWPPLLRKGVYYLSIAAAGFLV
FILALTIVRLIVFIIVWALTGGKLHFWIFPNLTEDVSFFASFWPLYESNY
NSDPNNSSAKTDKKSKSKDKKKEKESDAEDTAVDADGDADGDVDAEVSTL
EPEKIELIKEHDTDMEIRKRRKVGADDYEEDDVDEEETKAQPKDSKAGTP
RNSGSDSESSSKDYEIISSSEVQNVAGNASFLDH
BO27581.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:14:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trp1-PB | 428 | CG4758-PB | 1..428 | 1..428 | 2235 | 100 | Plus |
| Trp1-PA | 415 | CG4758-PA | 13..415 | 26..428 | 2102 | 100 | Plus |
| Trp1-PC | 398 | CG4758-PC | 1..398 | 1..398 | 2088 | 100 | Plus |
| Trp1-PD | 385 | CG4758-PD | 13..385 | 26..398 | 1955 | 100 | Plus |
