Clone BO27590 Report

Search the DGRC for BO27590

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:275
Well:90
Vector:pDNR-Dual
Associated Gene/Transcriptcrc-RA
Protein status:BO27590.pep: Imported from assembly
Sequenced Size:1177

Clone Sequence Records

BO27590.complete Sequence

1177 bp assembled on 2010-08-18

GenBank Submission: KX799242

> BO27590.complete
GAAGTTATCAGTCGACATGGACGCGACATTTCACCAAACCATGGAGAGCT
TGCAGTTGCCCAAGGAGCTGTACTGGGACCTCAAGATGGAGCCACAATCC
CCAACATCGGTTTTGGGCTCCGATCTGTTTCCGCTCACTGACTCAAACGA
TACGGAGTGGCTGTATGACGATAACTTTGCAAATGGCATTACTCTTATTG
GCGATGATGAAGCCTTGACCCTGGAAGAGGTAGCTTCTCTCCAGTTGCTT
AGTGATGAGGAGATGGTTGTGGAGATCTTTGACCTGAAAGATGAAGAATG
TCTTTTGGACCAAAAGGCAACGTTGAACTGCATCGATTATGACAGTAACA
GCTTTCAGCCGAACATTAATGTTATAACTCAGGCCATAGTACCCGCAAAC
AAAGTACAATTCGGTGCATCTTCAGACGCTGCTTCGCTTCCTTCTGCCGC
TGATTACCAGCTCAATGATGGCCCATCCCTTATTCTACAGCAATTAACGC
CGCCGCAGTCTCCGCCTCAATTCGATGCTTACAAACAGGCGGGCGATGCA
CAGCCAAAACCCGTGCTCGTAAAGGCCGAGCAAAAGGTGCAATGCTATAC
TCCTGATGTTACACACGCAGCATCTGCCACGCCCTTTAACTTTACCAACT
GGGTAGGCGGCAGCGAAATTGCCCGAGAGAACCAACTGGTCGATGATATC
GTCAATATGCGTGCTAAGGAGCTCGAATTGTCCACGAACTGGCAGCAGCT
CAATGAGGACTGCGAGTCTCAGGCGTCTTCATCTTTAGACAGCAGAAGCA
CAGGAAGCGGAGTGTGCAGCAGCATCGCCGACGCCGACGAGGACTGGGTT
CCAGAGCTTATCAGCAGCTCCTCCTCGCCAGCTCCTACAACCATCGAGCA
GTCTGCGTCCCAGCCAAAAAAGCGTACTCGCACTTACGGGCGCGGTGTAG
AGGATCGAAAGATCAGGAAAAAGGAGCAGAACAAGAACGCTGCCACACGA
TATCGCCAGAAAAAGAAACTTGAAATGGAGAATGTGCTGGGCGAGGAGCA
TGTGCTGTCTAAAGAAAACGAGCAGCTTCGTCGCACTCTGCAGGAGCGGC
ACAACGAAATGCGCTATCTGCGCCAGCTGATTCGAGAGTTCTACCATGAA
CGCAAGCGCGCAAGCTTTCTAGACCAT

BO27590.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:38:47
Subject Length Description Subject Range Query Range Score Percent Strand
crc-RE 1146 CG8669-PE 1..1143 17..1159 5715 100 Plus
crc-RA 1146 CG8669-PA 1..1143 17..1159 5715 100 Plus
crc-RF 1119 CG8669-PF 169..1116 212..1159 4740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
crc-RE 2244 CG8669-RE 629..1771 17..1159 5715 100 Plus
crc-RA 1905 CG8669-RA 290..1432 17..1159 5715 100 Plus
crc-RF 1878 CG8669-RF 458..1405 212..1159 4740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:38:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21318484..21319054 589..1159 2855 100 Plus
2L 23513712 2L 21318125..21318419 295..589 1475 100 Plus
2L 23513712 2L 21311875..21312044 17..186 850 100 Plus
2L 23513712 2L 21312097..21312208 185..296 560 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:38:45 has no hits.

BO27590.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:55:12 Download gff for BO27590.complete
Subject Subject Range Query Range Percent Splice Strand
crc-RA 302..1444 17..1161 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:18:47 Download gff for BO27590.complete
Subject Subject Range Query Range Percent Splice Strand
crc-RA 290..1432 17..1161 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:15:40 Download gff for BO27590.complete
Subject Subject Range Query Range Percent Splice Strand
crc-RA 290..1432 17..1161 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:15:40 Download gff for BO27590.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21311875..21312043 17..185 100 -> Plus
2L 21312098..21312208 186..296 100 -> Plus
2L 21318127..21318419 297..589 100 -> Plus
2L 21318485..21319054 590..1161 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:18:47 Download gff for BO27590.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21311875..21312043 17..185 100 -> Plus
arm_2L 21312098..21312208 186..296 100 -> Plus
arm_2L 21318127..21318419 297..589 100 -> Plus
arm_2L 21318485..21319054 590..1161 99   Plus

BO27590.pep Sequence

Translation from 16 to 1177

> BO27590.pep
MDATFHQTMESLQLPKELYWDLKMEPQSPTSVLGSDLFPLTDSNDTEWLY
DDNFANGITLIGDDEALTLEEVASLQLLSDEEMVVEIFDLKDEECLLDQK
ATLNCIDYDSNSFQPNINVITQAIVPANKVQFGASSDAASLPSAADYQLN
DGPSLILQQLTPPQSPPQFDAYKQAGDAQPKPVLVKAEQKVQCYTPDVTH
AASATPFNFTNWVGGSEIARENQLVDDIVNMRAKELELSTNWQQLNEDCE
SQASSSLDSRSTGSGVCSSIADADEDWVPELISSSSSPAPTTIEQSASQP
KKRTRTYGRGVEDRKIRKKEQNKNAATRYRQKKKLEMENVLGEEHVLSKE
NEQLRRTLQERHNEMRYLRQLIREFYHERKRASFLDH

BO27590.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
crc-PE 381 CG8669-PE 1..381 1..381 1968 100 Plus
crc-PA 381 CG8669-PA 1..381 1..381 1968 100 Plus
crc-PF 372 CG8669-PF 1..372 1..381 1902 97.6 Plus
crc-PB 298 CG8669-PB 11..298 94..381 1487 100 Plus