BO27591.complete Sequence
1417 bp assembled on 2010-08-18
GenBank Submission: KX795889
> BO27591.complete
GAAGTTATCAGTCGACATGAGGTGGGAATTTCTGCCATGTTTATTATTGC
TCATTTCAAACAATAAAATCTTTGGTTTTAAAGTACCCAGTATTAATTTT
GAAATGCTAAAGGATGAAGGATTCGAAGTGTCCATACCAGATGAGCCTGG
CATACAGCGGGTGTTCTACATGTTCCAAATTGACGACACCTGCCCGGCTC
TAATGGACTACATCACGGAGGCAGTGAACGGAAGTTGGGTCTCCAAGCAA
AAGATGAGTCTGCAGAACAACGACAAGCTGCAGATATCAATGCTGGTGCA
GTTCAATGAGGAAATCTTCGAAAAGAGTGAAACCAGGGTGATCATAAACA
CCCGGCTACTGACCACCAAAGACTCTAGCTCGCGAGGCATAACATTCCTT
ACAGGAGAGGGCGAGTGCCAGGCATACCTAGCTCCTGCACAGCAAGCCAA
ACGCTGCAAGGCCGCCCAAACGATAGTGAGCAATGGACGCCATACTTGCC
AGGGTGAACTGATCTTTGAGGACAACTTCTCGGAGGCGCAGCTGAACAAG
ACCACCTGGAAGCATGACATCCGACAGCGCATGTACCACGTGGAGGAGGA
GCTGGTGGCCTTCGACGATGCCGCACGCAACTGCTTTGTGAAGGAAGGCG
AACTCCATATCGTTCCCACTATCGCCACCGAGGTCACCGATGGCAGCTTC
AAACTGGGAGATCGCTGTACGGCCGTCGAAAGTCCGGAACAGGAGTGCAA
CATTGCGCACGGCATCTTCTATAGCATCAAGCCTCCAGTTTTCTCCGCCC
AAATTCACACCAGAAACTCTTTCAGTTTCAAATTTGGCAAAATCGTCGTG
CGCGCCAAGTTGCCCAAGGGGGATTGGCTTTTCCCCTATCTGATGCTCCA
ACCGGTTTCCACTTACGCGGAGACCCACTATGCCAAGCAATTGAGAATTG
CATATGCCCGTGGCAATGCCAATTTGAGGACGAAACAAGGAGATGATATC
TCCGGAAACCACTTATATGGCGGCGGTGTGGTTTGGCACCACGGCAATGC
AGTACAGTTCCTCAAGGACAAGATAAGCAACAGCCACTACGGGGACGACT
TTCACAACTACACCATGATCTGGCAGAGGGATAAGATTACCCTAATGGTA
GACGATGAGGTTTATGGGGAGCTGTACGACGGACTGCCATTCTTCAACGA
GAAGTGCTTTATTATCTTTGGCGTTACGGTGGGCGGCTTCCTGAACTTCG
ACGATAGTCTATTGGCCAAGGATGTCAAGCCTTATAAAAACAGGGAACCC
CGGGCTGCCCTCTCATTTTGGCAGCACCGCGATGCTTGGGCCCCCACTTG
GGGCAGGCACAGCGCCATGGTCATAGACTATGTTAGGGTTTATGCGGAGG
CAAGCTTTCTAGACCAT
BO27591.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:38:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GNBP2-RB | 1386 | CG4144-PB | 1..1383 | 17..1399 | 6915 | 100 | Plus |
| GNBP2-RA | 1299 | CG4144-PA | 1..1296 | 104..1399 | 6480 | 100 | Plus |
| GNBP2-RD | 1233 | CG4144-PD | 1..1230 | 170..1399 | 6150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:38:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GNBP2-RB | 1501 | CG4144-RB | 71..1454 | 16..1399 | 6920 | 100 | Plus |
| GNBP2-RA | 1439 | CG4144-RA | 75..1392 | 82..1399 | 6590 | 100 | Plus |
| GNBP2-RD | 1341 | CG4144-RD | 36..1294 | 141..1399 | 6295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:38:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18673521..18673975 | 1399..945 | 2275 | 100 | Minus |
| 3L | 28110227 | 3L | 18674545..18674981 | 573..137 | 2185 | 100 | Minus |
| 3L | 28110227 | 3L | 18674169..18674483 | 887..573 | 1575 | 100 | Minus |
| 3L | 28110227 | 3L | 18675215..18675343 | 144..16 | 630 | 99.2 | Minus |
| 3L | 28110227 | 3L | 18674047..18674104 | 945..888 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:38:39 has no hits.
BO27591.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:55:11 Download gff for
BO27591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GNBP2-RB | 85..1467 | 17..1401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:18:45 Download gff for
BO27591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GNBP2-RB | 85..1467 | 17..1401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:15:38 Download gff for
BO27591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GNBP2-RB | 72..1454 | 17..1401 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:15:38 Download gff for
BO27591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18674048..18674104 | 888..944 | 100 | <- | Minus |
| 3L | 18675219..18675342 | 17..140 | 100 | | Minus |
| 3L | 18674169..18674482 | 574..887 | 100 | <- | Minus |
| 3L | 18673517..18673975 | 945..1401 | 99 | <- | Minus |
| 3L | 18674545..18674977 | 141..573 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:18:45 Download gff for
BO27591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18667148..18667204 | 888..944 | 100 | <- | Minus |
| arm_3L | 18667269..18667582 | 574..887 | 100 | <- | Minus |
| arm_3L | 18666617..18667075 | 945..1401 | 99 | <- | Minus |
| arm_3L | 18667645..18668077 | 141..573 | 100 | <- | Minus |
| arm_3L | 18668319..18668442 | 17..140 | 100 | | Minus |
BO27591.pep Sequence
Translation from 16 to 1417
> BO27591.pep
MRWEFLPCLLLLISNNKIFGFKVPSINFEMLKDEGFEVSIPDEPGIQRVF
YMFQIDDTCPALMDYITEAVNGSWVSKQKMSLQNNDKLQISMLVQFNEEI
FEKSETRVIINTRLLTTKDSSSRGITFLTGEGECQAYLAPAQQAKRCKAA
QTIVSNGRHTCQGELIFEDNFSEAQLNKTTWKHDIRQRMYHVEEELVAFD
DAARNCFVKEGELHIVPTIATEVTDGSFKLGDRCTAVESPEQECNIAHGI
FYSIKPPVFSAQIHTRNSFSFKFGKIVVRAKLPKGDWLFPYLMLQPVSTY
AETHYAKQLRIAYARGNANLRTKQGDDISGNHLYGGGVVWHHGNAVQFLK
DKISNSHYGDDFHNYTMIWQRDKITLMVDDEVYGELYDGLPFFNEKCFII
FGVTVGGFLNFDDSLLAKDVKPYKNREPRAALSFWQHRDAWAPTWGRHSA
MVIDYVRVYAEASFLDH
BO27591.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:13:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GNBP2-PB | 461 | CG4144-PB | 1..461 | 1..461 | 2466 | 100 | Plus |
| GNBP2-PA | 432 | CG4144-PA | 1..432 | 30..461 | 2310 | 100 | Plus |
| GNBP2-PD | 410 | CG4144-PD | 1..410 | 52..461 | 2194 | 100 | Plus |
| GNBP1-PA | 492 | CG6895-PA | 8..491 | 9..460 | 580 | 32.5 | Plus |
| GNBP3-PA | 490 | CG5008-PA | 13..489 | 8..460 | 368 | 26.8 | Plus |
