BO27601.complete Sequence
496 bp assembled on 2010-08-18
GenBank Submission: KX796972
> BO27601.complete
GAAGTTATCAGTCGACATGGCTGATCAGCAAACCGAACGCTCGTTCCGCA
AGCAACACGCGGTGGTCGTTGTGCGTCGCAAGAGCCCCAACTTGAAGAAA
AGGCCCCGTTTCTATCGCCAAATTGGCCTGGGCTTCCGCGCTCCGGCGGA
GGCCATCGATGGTACCTACATCGACAAGAAGTGCCCCTGGACCGGTGATG
TGAGGATCCGTGGTCGCATTCTGACCGGCGTGGTCCGCAAGGCCAAGATG
CAGCGCACCATTGTCATTCGGCGCGACTACCTGCACTTTGTGCGCAAATA
CAGCCGTTTCGAGAAGCGTCACCGCAACATGAGCGTCCACTGCTCCCCTG
TGTTCAGAGATGTTGAGCATGGCGATATTGTCACCATTGGTGAGTGCCGT
CCTCTGTCCAAGACTGTGCGCTTCAACGTCCTGAAAGTCAGCAAGGGTCA
GGGAGCCAAGAAGAGCTTCAAGAAGTACGCAAGCTTTCTAGACCAT
BO27601.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:57:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS11-RB | 465 | CG8857-PB | 1..462 | 17..478 | 2310 | 100 | Plus |
RpS11-RC | 468 | CG8857-PC | 136..465 | 149..478 | 1650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:57:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS11-RB | 569 | CG8857-RB | 28..491 | 15..478 | 2320 | 100 | Plus |
RpS11-RC | 738 | CG8857-RC | 165..494 | 149..478 | 1650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:56:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12199834..12200041 | 357..150 | 1040 | 100 | Minus |
2R | 25286936 | 2R | 12200427..12200553 | 152..26 | 635 | 100 | Minus |
2R | 25286936 | 2R | 12199469..12199592 | 478..355 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:56:59 has no hits.
BO27601.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:53:10 Download gff for
BO27601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS11-RB | 43..504 | 17..480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:25 Download gff for
BO27601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS11-RB | 30..491 | 17..480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:28:02 Download gff for
BO27601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS11-RB | 30..491 | 17..480 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:28:02 Download gff for
BO27601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12200428..12200555 | 22..151 | 98 | | Minus |
2R | 12199467..12199589 | 358..480 | 98 | <- | Minus |
2R | 12199834..12200039 | 152..357 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:25 Download gff for
BO27601.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8086972..8087094 | 358..480 | 98 | <- | Minus |
arm_2R | 8087339..8087544 | 152..357 | 100 | <- | Minus |
arm_2R | 8087933..8088060 | 22..151 | 98 | | Minus |
BO27601.pep Sequence
Translation from 16 to 496
> BO27601.pep
MADQQTERSFRKQHAVVVVRRKSPNLKKRPRFYRQIGLGFRAPAEAIDGT
YIDKKCPWTGDVRIRGRILTGVVRKAKMQRTIVIRRDYLHFVRKYSRFEK
RHRNMSVHCSPVFRDVEHGDIVTIGECRPLSKTVRFNVLKVSKGQGAKKS
FKKYASFLDH
BO27601.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:19:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS11-PB | 154 | CG8857-PB | 1..154 | 1..154 | 807 | 100 | Plus |
RpS11-PC | 155 | CG8857-PC | 1..155 | 1..154 | 660 | 83.3 | Plus |