BO27659.complete Sequence
1147 bp assembled on 2010-08-18
GenBank Submission: KX795620
> BO27659.complete
GAAGTTATCAGTGGACATGAATCACCTTGGCGTTTTTGAAACCCGTTTTC
GCCCTCGAACTAGGCACAAATCGCAGAGGGCACAATTGATTCCAGAACAA
ATCACAATGCGCACAGCTGTTTTGCTGCCACTTTTGGCCCTGCTGGCGGT
GGCTCAGGCCGTTTCCTTCGCCGACGTGGTCATGGAGGAATGGCATACGT
TCAAGCTGGAGCACCGCAAGAACTATCAGGATGAAACCGAGGAGCGTTTC
CGCCTCAAGATCTTCAATGAGAACAAGCACAAGATTGCCAAGCACAACCA
GCGATTCGCCGAGGGCAAGGTGAGCTTCAAACTGGCGGTCAATAAGTACG
CCGATTTGCTGCACCACGAATTCCGTCAGCTGATGAACGGCTTCAACTAC
ACTCTGCACAAGCAACTGCGTGCCGCCGATGAAAGCTTCAAGGGAGTCAC
CTTCATCTCGCCGGCTCATGTGACGCTGCCCAAATCTGTGGACTGGCGCA
CCAAGGGAGCTGTGACCGCCGTCAAGGATCAGGGACACTGCGGCAGCTGC
TGGGCCTTCTCCAGCACAGGCGCCCTCGAGGGTCAGCATTTCCGCAAGTC
CGGTGTCCTCGTCTCGCTGTCCGAGCAGAATCTGGTCGATTGCTCCACCA
AGTACGGCAACAATGGATGCAACGGCGGTCTCATGGACAATGCCTTCCGC
TATATTAAGGATAATGGAGGCATCGATACCGAGAAGTCCTATCCCTACGA
GGCCATCGATGACTCGTGCCACTTTAACAAGGGCACAGTCGGAGCCACCG
ATCGTGGATTCACCGATATTCCCCAGGGTGATGAGAAGAAGATGGCCGAG
GCTGTGGCCACCGTTGGTCCCGTTTCCGTCGCCATCGATGCCTCCCACGA
GTCGTTCCAGTTCTACTCGGAGGGCGTCTACAACGAGCCGCAGTGTGATG
CCCAGAATCTGGATCACGGTGTGCTGGTCGTTGGCTTCGGCACCGACGAG
TCCGGCGAGGATTACTGGCTGGTGAAGAACTCGTGGGGCACCACCTGGGG
CGACAAGGGCTTCATCAAGATGCTGCGCAACAAGGAGAACCAGTGCGGCA
TCGCTAGCGCCTCCAGCTATCCCCTGGTCGCAAGCTTTCTAGACCAT
BO27659.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:42:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cp1-RC | 1116 | CG6692-PC | 1..1113 | 17..1129 | 5565 | 100 | Plus |
| Cp1-RA | 1026 | CG6692-PA | 1..1023 | 107..1129 | 5115 | 100 | Plus |
| Cp1-RE | 1017 | CG6692-PE | 90..1014 | 205..1129 | 4625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:42:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cp1-RC | 1369 | CG6692-RC | 14..1126 | 17..1129 | 5565 | 100 | Plus |
| Cp1-RA | 1486 | CG6692-RA | 201..1243 | 87..1129 | 5215 | 100 | Plus |
| Cp1-RD | 1481 | CG6692-RD | 313..1238 | 204..1129 | 4630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:42:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13967029..13967738 | 420..1129 | 3550 | 100 | Plus |
| 2R | 25286936 | 2R | 13966753..13966969 | 204..420 | 1085 | 100 | Plus |
| 2R | 25286936 | 2R | 13962219..13962336 | 88..205 | 590 | 100 | Plus |
| 2R | 25286936 | 2R | 13961194..13961265 | 17..88 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:42:17 has no hits.
BO27659.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:56:05 Download gff for
BO27659.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp1-RC | 14..1126 | 17..1131 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:05 Download gff for
BO27659.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp1-RC | 14..1126 | 17..1131 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:16:47 Download gff for
BO27659.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp1-RC | 14..1126 | 17..1131 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:16:47 Download gff for
BO27659.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13961194..13961265 | 17..88 | 100 | -> | Plus |
| 2R | 13962220..13962336 | 89..205 | 100 | -> | Plus |
| 2R | 13966755..13966969 | 206..420 | 100 | -> | Plus |
| 2R | 13967030..13967738 | 421..1131 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:05 Download gff for
BO27659.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9848699..9848770 | 17..88 | 100 | -> | Plus |
| arm_2R | 9849725..9849841 | 89..205 | 100 | -> | Plus |
| arm_2R | 9854260..9854474 | 206..420 | 100 | -> | Plus |
| arm_2R | 9854535..9855243 | 421..1131 | 99 | | Plus |
BO27659.pep Sequence
Translation from 16 to 1147
> BO27659.pep
MNHLGVFETRFRPRTRHKSQRAQLIPEQITMRTAVLLPLLALLAVAQAVS
FADVVMEEWHTFKLEHRKNYQDETEERFRLKIFNENKHKIAKHNQRFAEG
KVSFKLAVNKYADLLHHEFRQLMNGFNYTLHKQLRAADESFKGVTFISPA
HVTLPKSVDWRTKGAVTAVKDQGHCGSCWAFSSTGALEGQHFRKSGVLVS
LSEQNLVDCSTKYGNNGCNGGLMDNAFRYIKDNGGIDTEKSYPYEAIDDS
CHFNKGTVGATDRGFTDIPQGDEKKMAEAVATVGPVSVAIDASHESFQFY
SEGVYNEPQCDAQNLDHGVLVVGFGTDESGEDYWLVKNSWGTTWGDKGFI
KMLRNKENQCGIASASSYPLVASFLDH
BO27659.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:21:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cp1-PC | 371 | CG6692-PC | 1..371 | 1..371 | 1979 | 100 | Plus |
| Cp1-PA | 341 | CG6692-PA | 1..341 | 31..371 | 1822 | 100 | Plus |
| Cp1-PE | 338 | CG6692-PE | 31..338 | 64..371 | 1661 | 100 | Plus |
| Cp1-PD | 249 | CG6692-PD | 1..249 | 123..371 | 1349 | 100 | Plus |
| CG4847-PE | 390 | CG4847-PE | 79..390 | 56..371 | 621 | 41.7 | Plus |
