BO27678.complete Sequence
1063 bp assembled on 2010-08-18
GenBank Submission: KX799210
> BO27678.complete
GAAGTTATCAGTCGACATGTATAAGGGTGGTCGGACACCTTCTATTAGGT
CCAGTGAAAGGCGTCGTCCTCAAAGTGTTTCATCTATATCCACACTATCC
CCGAGAGTTGTTTTGTCCAGATTGGAGCCGAGGGAGTTTGAACGTCTTCG
ACTATCCTACAAAATTGCAATCGACCAAAGAAGATCCAGAAGCTGCCGTG
GCATGAACATGGGTCAAAAAATTAGTGGCGGAGTCAAAACAGTTAGTCGC
AATGATTCACAGTCTACATTTAAACCAATAATACCAAGAGAGTTGCAAGC
TGATTTCGTTAAACCAGCGCGAATCGATATATTACTTGATATGCCGCCAG
CATCTCGAGATCTTCAATTGAAGCATTCATGGAACTCCGAAGATCGGTCT
CTTAACATTTTTGTAAAAGAGGACGACAAGTTGACATTTCATAGGCACCC
AGTGGCTCAAAGTACTGACTGTATTCGCGGAAAAGTCGGACTTACAAAGG
GATTGCATATTTGGGAAATTTATTGGCCAACAAGGCAAAGAGGAACCCAC
GCTGTTGTTGGCGTATGCACTGCAGATGCACCTTTACATTCAGTTGGCTA
CCAAAGTTTAGTTGGATCAACTGAACAAAGTTGGGGCTGGGACTTAGGAA
GAAATAAATTATACCATGACTCAAAAAACTGCGCTGGAGTGACATATCCA
GCAATTCTTAAAAACGACGAAGCTTTTTTAGTTCCAGATAAGTTCTTAGT
AGCGTTAGATATGGACGAAGGAACACTAAGCTTCATTGTTGATCAGCAGT
ACCTCGGTATTGCGTTTAGAGGACTGCGAGGGAAAAAACTATATCCAATT
GTTTCGGCGGTCTGGGGACACTGTGAAATAACAATGCGTTACATTGGTGG
ATTAGATCCCGAACCCTTGCCCCTAATGGATCTTTGCCGAAGAACAATTC
GTCAAAAAATTGGTCGCACAAACTTGGAGGAGCACATTCAACAGCTTCAA
CTTCCTTTATCAATGAAAACATATTTATTGTATAAAAACCGTAGAGCAAG
CTTTCTAGACCAT
BO27678.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:42:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gus-RM | 840 | CG2944-PM | 1..837 | 209..1045 | 4185 | 100 | Plus |
| gus-RL | 840 | CG2944-PL | 1..837 | 209..1045 | 4185 | 100 | Plus |
| gus-RK | 840 | CG2944-PK | 1..837 | 209..1045 | 4185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:42:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gus-RM | 1525 | CG2944-RM | 163..1191 | 17..1045 | 5145 | 100 | Plus |
| gus-RK | 1813 | CG2944-RK | 332..1360 | 17..1045 | 5145 | 100 | Plus |
| gus-RJ | 1730 | CG2944-RJ | 368..1396 | 17..1045 | 5145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:42:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5120763..5121652 | 908..19 | 4450 | 100 | Minus |
| 2R | 25286936 | 2R | 5117666..5117802 | 1045..909 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:42:05 has no hits.
BO27678.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:56:03 Download gff for
BO27678.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RB | 86..1114 | 17..1047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:20:01 Download gff for
BO27678.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RJ | 368..1396 | 17..1047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:16:42 Download gff for
BO27678.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RJ | 368..1396 | 17..1047 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:16:42 Download gff for
BO27678.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5117664..5117802 | 909..1047 | 98 | <- | Minus |
| 2R | 5120763..5121654 | 17..908 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:20:01 Download gff for
BO27678.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1005169..1005307 | 909..1047 | 98 | <- | Minus |
| arm_2R | 1008268..1009159 | 17..908 | 99 | | Minus |
BO27678.pep Sequence
Translation from 16 to 1063
> BO27678.pep
MYKGGRTPSIRSSERRRPQSVSSISTLSPRVVLSRLEPREFERLRLSYKI
AIDQRRSRSCRGMNMGQKISGGVKTVSRNDSQSTFKPIIPRELQADFVKP
ARIDILLDMPPASRDLQLKHSWNSEDRSLNIFVKEDDKLTFHRHPVAQST
DCIRGKVGLTKGLHIWEIYWPTRQRGTHAVVGVCTADAPLHSVGYQSLVG
STEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDEAFLVPDKFLVALDMD
EGTLSFIVDQQYLGIAFRGLRGKKLYPIVSAVWGHCEITMRYIGGLDPEP
LPLMDLCRRTIRQKIGRTNLEEHIQQLQLPLSMKTYLLYKNRRASFLDH
BO27678.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:21:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gus-PM | 279 | CG2944-PM | 1..279 | 65..343 | 1486 | 100 | Plus |
| gus-PL | 279 | CG2944-PL | 1..279 | 65..343 | 1486 | 100 | Plus |
| gus-PK | 279 | CG2944-PK | 1..279 | 65..343 | 1486 | 100 | Plus |
| gus-PJ | 279 | CG2944-PJ | 1..279 | 65..343 | 1486 | 100 | Plus |
| gus-PI | 279 | CG2944-PI | 1..279 | 65..343 | 1486 | 100 | Plus |
