BO27685.complete Sequence
1846 bp assembled on 2010-09-13
GenBank Submission: KX795986
> BO27685.complete
GAAGTTATCAGTCGACATGAGTCAACAGGCGAAAAACGAAAACATCTACG
CAACTCTGCCGCGCACCCAACGCGGCCAACCCATCGTTTTGGGTGCCGAT
CCCAAGGGCAAGAACTTCCTGTACACCAATGGAAACTCTGTGATCATCCG
GAACATCGAGAATCCAGCCATTGCCGATGTCTACACGGAGCACTCGTGTG
CAGTGAACGTGGCCAAGTACTCGCCCAGCGGATTTTATATTGCATCTGGT
GACGCCTCCGGCAAGATTCGCATTTGGGACACGGTCAACAAGGAGCACCT
GCTTAAAAATGAGTTCCAGCCCATTGCAGGACCCATCAAGGATATTAGCT
GGTCGCCAGACAATCAGCGCATCGTTGCCGTGGGTGAAGGACGCGAACGT
TTCGGTCATGTCTTTATGTCTGAAACCGGCACGTCTGTGGGCGAGATCAG
TGGCCAGTCCAAGTCTATTAACTCGGCGGACTTCCGGCCAGCCAGGCCAT
TCCGCATTGTTACGGGCAGCGAAGACAATACTATCGCCGTGTTCGAGGGA
CCCCCGTTCAAGTTCAAGATGACCAAGCAGGATCACTCTCGCTTCGTCCA
GGCTGTGCGCTACTCGCCCGATGGCAAATTCTTCGCCTCCGCCGGCTTTG
ATGGCAAAGTCTTTCTGTACGATGGCACCAGCTCTGAACTGGTGGGCGAA
TTTGGATCTCCTGCCCACAAGGGCGGCGTTTACGCATTGGCCTGGAAACC
AGACAGCACCCAACTGCTAACCTGCTCCGGCGACAAGACGTGCCGCCTTT
GGACAGTGGAGTCGCGCGAGCTGGTTAGCGAGTTTGTGATGGGCACCACT
GTGGACGACCAGCAGGTGTCCTGCTTGTGGCAAGGAGACAACCTAATCAC
CGTCTCGCTTTCGGGCGTGATCACCTACCTCAATGTGGCGGATCCCTCGA
AACCGCTGCGTGTGGTGAAGGGCCACAATAAGCCCATCACCGTGCTGGGA
CTGAGCGATGACCGCAGCACCATATACACGGGTAGCCACGATGGCGTGGT
GACCAACTGGAACTCGGGCAGCGGCACCAACGATCGCATCACGGGCACTG
GACACGGAAACCAGATCAACGGCATTGCCGCCTGGGGTGACTTTGTCTAT
ACCTGTGGCATCGACGACAGCCTACGCCAGTTCAGCGTGGAGGGCAACTC
CTACACGGACTATGTGGTGAAGCTTAACTGCCAGCCACGTGGCTTGGCCA
TTTTGCGCAACGAGAACATCATTGCACTTGCTTGCATCAAAGAGTTGACT
CTCGTGCAGGACCAGAAGAAGATCTTTTCGCTGCCCATTAAGTACGAGGC
TAGCTCGATTGCCGTTAATGCGGACACTTCCGATGTTGCTGTCGGCGGGG
ATGACCAAAAGTTGCACATCTACACCCTGAAGGGCGGAGTATTGGAGCCC
AAAGTGGAGCTGGATCACTTGGGAGCTGTCACGGATGTTTCTTATTCGCC
GGACTTGAAGTATTTGGTGGCTTGCGATGCCCATCGCAAGGTGGTGCTCT
ACTCAGTGGAGGAGTACAAGCCTGCACACAACAAGGAGTGGGGCTTCCAC
AGTGCTCGCGTAAATACGGTGGCCTGGTCGCCCAACTCGCTGCTGGTTGC
TAGTGGATCATTGGACACTACTATCATTATCTGGTCCGTGGCCAATCCGG
CCAAACATACTATCATCAAGAATGCCCATCCGCAGTCGCAAATCACTCGG
TTGGTCTGGCTGGACAATAACACTGTGATCTCCACCGGACAGGACTGCAA
CACCAAGGTGTGGCACGTGGAAAACATTGCAAGCTTTCTAGACCAT
BO27685.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:02:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| flr-RB | 1815 | CG10724-PB | 1..1812 | 17..1828 | 9060 | 100 | Plus |
| flr-RA | 1827 | CG10724-PA | 29..1824 | 33..1828 | 8965 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:02:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| flr-RB | 2210 | CG10724-RB | 47..1858 | 17..1828 | 9060 | 100 | Plus |
| flr-RA | 2275 | CG10724-RA | 128..1923 | 33..1828 | 8965 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:02:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13414660..13415720 | 510..1570 | 5290 | 99.9 | Plus |
| 3L | 28110227 | 3L | 13414336..13414601 | 251..516 | 1330 | 100 | Plus |
| 3L | 28110227 | 3L | 13415774..13415927 | 1568..1721 | 770 | 100 | Plus |
| 3L | 28110227 | 3L | 13413316..13413438 | 38..160 | 615 | 100 | Plus |
| 3L | 28110227 | 3L | 13415995..13416101 | 1722..1828 | 535 | 100 | Plus |
| 3L | 28110227 | 3L | 13414056..13414148 | 159..251 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 05:02:45 has no hits.
BO27685.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-16 10:43:37 Download gff for
BO27685.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10724-RB | 47..1858 | 17..1830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:11 Download gff for
BO27685.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| flr-RB | 47..1858 | 17..1830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:02:58 Download gff for
BO27685.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| flr-RB | 47..1858 | 17..1830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:02:58 Download gff for
BO27685.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13413052..13413073 | 17..38 | 100 | -> | Plus |
| 3L | 13413317..13413438 | 39..160 | 100 | -> | Plus |
| 3L | 13414058..13414148 | 161..251 | 100 | -> | Plus |
| 3L | 13414337..13414600 | 252..515 | 100 | -> | Plus |
| 3L | 13414666..13415720 | 516..1570 | 100 | -> | Plus |
| 3L | 13415777..13415927 | 1571..1721 | 100 | -> | Plus |
| 3L | 13415995..13416101 | 1722..1830 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:11 Download gff for
BO27685.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13406152..13406173 | 17..38 | 100 | -> | Plus |
| arm_3L | 13406417..13406538 | 39..160 | 100 | -> | Plus |
| arm_3L | 13407158..13407248 | 161..251 | 100 | -> | Plus |
| arm_3L | 13407437..13407700 | 252..515 | 100 | -> | Plus |
| arm_3L | 13407766..13408820 | 516..1570 | 100 | -> | Plus |
| arm_3L | 13408877..13409027 | 1571..1721 | 100 | -> | Plus |
| arm_3L | 13409095..13409201 | 1722..1830 | 98 | | Plus |
BO27685.pep Sequence
Translation from 16 to 1846
> BO27685.pep
MSQQAKNENIYATLPRTQRGQPIVLGADPKGKNFLYTNGNSVIIRNIENP
AIADVYTEHSCAVNVAKYSPSGFYIASGDASGKIRIWDTVNKEHLLKNEF
QPIAGPIKDISWSPDNQRIVAVGEGRERFGHVFMSETGTSVGEISGQSKS
INSADFRPARPFRIVTGSEDNTIAVFEGPPFKFKMTKQDHSRFVQAVRYS
PDGKFFASAGFDGKVFLYDGTSSELVGEFGSPAHKGGVYALAWKPDSTQL
LTCSGDKTCRLWTVESRELVSEFVMGTTVDDQQVSCLWQGDNLITVSLSG
VITYLNVADPSKPLRVVKGHNKPITVLGLSDDRSTIYTGSHDGVVTNWNS
GSGTNDRITGTGHGNQINGIAAWGDFVYTCGIDDSLRQFSVEGNSYTDYV
VKLNCQPRGLAILRNENIIALACIKELTLVQDQKKIFSLPIKYEASSIAV
NADTSDVAVGGDDQKLHIYTLKGGVLEPKVELDHLGAVTDVSYSPDLKYL
VACDAHRKVVLYSVEEYKPAHNKEWGFHSARVNTVAWSPNSLLVASGSLD
TTIIIWSVANPAKHTIIKNAHPQSQITRLVWLDNNTVISTGQDCNTKVWH
VENIASFLDH
BO27685.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:28:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| flr-PB | 604 | CG10724-PB | 1..604 | 1..604 | 3182 | 100 | Plus |
| flr-PA | 608 | CG10724-PA | 10..608 | 6..604 | 3151 | 99.7 | Plus |
| Nle-PA | 488 | CG2863-PA | 117..486 | 146..599 | 240 | 23.3 | Plus |
| Poc1-PA | 391 | CG10191-PA | 7..305 | 49..356 | 238 | 23.3 | Plus |
| Poc1-PB | 403 | CG10191-PB | 7..305 | 49..356 | 238 | 23.3 | Plus |
