BO27692.complete Sequence
853 bp assembled on 2010-08-18
GenBank Submission: KX800073
> BO27692.complete
GAAGTTATCAGTCGACATGAAGCCCCAGACAAGCGAGCAAAATGGCAGTG
GCCAAAATGGCGAGGGTGCCGCAGATGCCGTGGCCGTTGCCACGATCCCC
ACGGGCGAAGCCTCCGCCGCCTCCGCCACGTCCGGCACCGATCTAACGGT
CTCCAAAAACAGCCAGCAGCTGAAACTGGAAATGCTCAACTTGGAGCTGG
CCAGCAATGGAAGCGGCCACGAGAAGTGCACGTTCCACCACGACCTGGAG
CTGGACCACAAGCCGCCGACGCGAGAGGCCCTCCTTCCGGACATGGCACG
CTCGTATCGTCTACTCTTGGGCGGCCTGGGCGAGAATCCCGATCGCCAGG
GACTGATCAAGACGCCGGAGCGGGCAGCCAAGGCCATGCTGTACTTCACC
AAGGGCTACGACCAGAGTCTCGAGGATGTTCTCAATGGCGCCGTTTTCGA
CGAGGATCATGACGAAATGGTGGTGGTCAAGGATATTGAAATGTTCTCCA
TGTGCGAGCATCATCTGGTGCCCTTCTACGGCAAAGTTTCCATCGGTTAT
TTGCCGTGCAACAAGATTCTCGGACTCAGTAAATTGGCACGCATTGTCGA
AATATTTTCGCGTCGCCTGCAAGTCCAGGAGCGCTTAACTAAGCAGATCG
CAGTGGCCGTGACTCAGGCCGTGCAACCCGCTGGAGTAGCAGTGGTCGTA
GAGGGAGTCCACATGTGCATGGTGATGCGTGGCGTGCAGAAGATCAACAG
CAAAACTGTTACCTCAACTATGCTGGGCGTGTTCCGAGACGATCCCAAGA
CCCGTGAGGAATTCCTGAACTTAGTCAATAGCAAAGCAAGCTTTCTAGAC
CAT
BO27692.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:41:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pu-RB | 822 | CG9441-PB | 1..819 | 17..835 | 4095 | 100 | Plus |
| Pu-RA | 975 | CG9441-PA | 352..972 | 215..835 | 3105 | 100 | Plus |
| Pu-RC | 927 | CG9441-PC | 304..924 | 215..835 | 3105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:41:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pu-RB | 1625 | CG9441-RB | 159..979 | 15..835 | 4105 | 100 | Plus |
| Pu-RA | 1793 | CG9441-RA | 527..1147 | 215..835 | 3105 | 100 | Plus |
| Pu-RC | 1744 | CG9441-RC | 478..1098 | 215..835 | 3105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:41:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21179937..21180147 | 215..425 | 1055 | 100 | Plus |
| 2R | 25286936 | 2R | 21175473..21175674 | 15..216 | 1010 | 100 | Plus |
| 2R | 25286936 | 2R | 21181419..21181585 | 425..591 | 835 | 100 | Plus |
| 2R | 25286936 | 2R | 21181836..21181962 | 709..835 | 635 | 100 | Plus |
| 2R | 25286936 | 2R | 21181644..21181761 | 591..708 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:41:54 has no hits.
BO27692.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:56:01 Download gff for
BO27692.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pu-RB | 159..977 | 17..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:19:58 Download gff for
BO27692.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pu-RB | 161..979 | 17..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:16:39 Download gff for
BO27692.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pu-RB | 161..979 | 17..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:16:39 Download gff for
BO27692.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21175475..21175673 | 17..215 | 100 | -> | Plus |
| 2R | 21179938..21180147 | 216..425 | 100 | -> | Plus |
| 2R | 21181420..21181585 | 426..591 | 100 | -> | Plus |
| 2R | 21181645..21181761 | 592..708 | 100 | -> | Plus |
| 2R | 21181836..21181962 | 709..837 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:19:58 Download gff for
BO27692.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17062980..17063178 | 17..215 | 100 | -> | Plus |
| arm_2R | 17067443..17067652 | 216..425 | 100 | -> | Plus |
| arm_2R | 17068925..17069090 | 426..591 | 100 | -> | Plus |
| arm_2R | 17069150..17069266 | 592..708 | 100 | -> | Plus |
| arm_2R | 17069341..17069467 | 709..837 | 98 | | Plus |
BO27692.pep Sequence
Translation from 16 to 853
> BO27692.pep
MKPQTSEQNGSGQNGEGAADAVAVATIPTGEASAASATSGTDLTVSKNSQ
QLKLEMLNLELASNGSGHEKCTFHHDLELDHKPPTREALLPDMARSYRLL
LGGLGENPDRQGLIKTPERAAKAMLYFTKGYDQSLEDVLNGAVFDEDHDE
MVVVKDIEMFSMCEHHLVPFYGKVSIGYLPCNKILGLSKLARIVEIFSRR
LQVQERLTKQIAVAVTQAVQPAGVAVVVEGVHMCMVMRGVQKINSKTVTS
TMLGVFRDDPKTREEFLNLVNSKASFLDH
BO27692.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:20:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pu-PB | 273 | CG9441-PB | 1..273 | 1..273 | 1389 | 100 | Plus |
| Pu-PC | 308 | CG9441-PC | 58..308 | 18..273 | 1088 | 85.2 | Plus |
| Pu-PA | 324 | CG9441-PA | 114..324 | 63..273 | 1071 | 98.6 | Plus |
