Clone BO27704 Report

Search the DGRC for BO27704

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:277
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG4950-RB
Protein status:BO27704.pep: Imported from assembly
Sequenced Size:1756

Clone Sequence Records

BO27704.complete Sequence

1756 bp assembled on 2010-10-15

GenBank Submission: KX796331

> BO27704.complete
GAAGTTATCAGTCGACATGAATAGAACGCGAAGGATACTCGAAGTGATCG
TTATCCTTATTCTAGCGATATCGAGTTGTGATGGCAGTGGAGGAGATATC
CCCCTGCGATGCGACGAGTACGATTCCATGGGATACATGGACGTGAATGA
GGCGTTTTGCACGGTCACCGGATTCACGGTCACACACAGTCAAAATGTCG
TGATCAAGAACATACCACCCGGAAATATGGTCAAGTTCATGAAGTTTTAC
GAATCAACGCTGCTCTATATGCCCTTCCATCTATTCGAAACATTCCCATA
TCTCAAGACCCTCGATGTCTCGAATACGAATATTTTGGAGCTAACGAGAA
ATGCATTCAGTGCTGCGAGTAATCTCACCTATCTGAATCTGGCCTACAAT
AATCTGACATCTATCCAGACTTCTGTGTTTATTGGCGCCAATGTTCTGAT
GCGTTTGGATTTGTCCTACAATGAGATATCCTCGCTGAGTGTGAATGCCT
TCTGTGGCCTGCACACCATTAGCCAGATTTATCTAACGGGCAATCTGTTG
AAGGAGCTGCACAACGATATCTTCAAGGATAACGAGTACTTGGAGAAGGT
GTCCTTCGAGGGAAATCTACTGACCAGCATTCAACCGGAGGTTTTTCGCA
ATATGCGGCGCATCAAGGAGGTTAATCTATCCAATAATCGCCTGATTTTC
ATCCATCCGGACACTTTTGCGGATGCGGCAAGCTTGGAGAATCTGGTGTT
GTCCTATAATGAGTTGAAAAACTTCCAGCTGACGGAGAAGAATATTGTGC
ATCAGCTGCACTTGGATAATAATTATCTTACAAATTTGACCATAAATGCA
ACTCGATTCGTTCGCGCCAGTCACAATCAAATTTCGGAGCTCTTTCTGCA
CCAGAGTTTGCATATCGAAACATTGGATTTAAGTGCCAACAAGTTGAGTA
GCATATCGAATATCACCAATATCACACATATGCTCTACTTGGATGTATCG
GATAATCCAATTGGTCCGCTTAATATCAGCACCTTTTCGCAACTTAAGAG
ACTGAGGGGACTAAATTTGCGAGGAACTGGAATTAGAGAGCTTAAATTTG
GAATGTTTTCGAAGCAGAAGTACTTGGAGGAACTGGATCTTTCGTTTAAC
AACCTGACCATTCTCAATTTGGATATGTTTGTGCCCTATCTGACTAATCT
GAAGAAGTTCCTCATCGACGGCAATGGGCTGACTGAGCTGCAGGGAAATC
GCACGTTTTCCGAAGCTTTTCCACAACTTCAGAAATTGGGAGTATCGAGG
AACCGCTTCAACTGCTCCTATCTACATCATCTACTCATCCCACCATCGCT
ACCCGAGTCCGTAGTGCTCAATATTGAACCGGACACCAATCTGGATGAGA
CCCCACACATTCGTGACGTATCCTGCATCAGTCAATCCCAGGAGGTCGTT
AATGCCTCCTTCACCGCCGAGGAATCCAAGCTAGAATCGCAGATTCAAAT
GCTTTCGAAACAGTTGGATATTGTAGGCTCGCATTCGAAGAATCTGGAAC
TTCACCTGGCCTTTATGCAGATCTTTGCGTACGTTATGGGCGGCCTGGTC
CTGGTGGGTGTGGTGTCACTGATAACCCTTCGATATCTGAAGAATCAACG
ATCGGGTCGATATGATCGCAGCAGCATTGTCTTCCGCTCCAATGCCACAA
TGGAAGCTAATCTCACCCTGGGCAGTGAAGATCTTCAGGCAAGCTTTCTA
GACCAT

BO27704.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:03:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG4950-RB 1725 CG4950-PB 1..1722 17..1738 8610 100 Plus
CG4950-RC 1725 CG4950-PC 1..1722 17..1738 8610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:03:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4950-RB 1796 CG4950-RB 16..1737 17..1738 8610 100 Plus
CG4950-RC 2360 CG4950-RC 16..1737 17..1738 8610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:03:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16266420..16268141 1738..17 8610 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:03:28 has no hits.

BO27704.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-15 09:23:04 Download gff for BO27704.complete
Subject Subject Range Query Range Percent Splice Strand
CG4950-RB 16..1737 17..1740 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:28:30 Download gff for BO27704.complete
Subject Subject Range Query Range Percent Splice Strand
CG4950-RC 16..1737 17..1740 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:34 Download gff for BO27704.complete
Subject Subject Range Query Range Percent Splice Strand
CG4950-RC 16..1737 17..1740 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:34 Download gff for BO27704.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16266416..16268141 17..1740 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:28:30 Download gff for BO27704.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16259516..16261241 17..1740 99   Minus

BO27704.pep Sequence

Translation from 16 to 1756

> BO27704.pep
MNRTRRILEVIVILILAISSCDGSGGDIPLRCDEYDSMGYMDVNEAFCTV
TGFTVTHSQNVVIKNIPPGNMVKFMKFYESTLLYMPFHLFETFPYLKTLD
VSNTNILELTRNAFSAASNLTYLNLAYNNLTSIQTSVFIGANVLMRLDLS
YNEISSLSVNAFCGLHTISQIYLTGNLLKELHNDIFKDNEYLEKVSFEGN
LLTSIQPEVFRNMRRIKEVNLSNNRLIFIHPDTFADAASLENLVLSYNEL
KNFQLTEKNIVHQLHLDNNYLTNLTINATRFVRASHNQISELFLHQSLHI
ETLDLSANKLSSISNITNITHMLYLDVSDNPIGPLNISTFSQLKRLRGLN
LRGTGIRELKFGMFSKQKYLEELDLSFNNLTILNLDMFVPYLTNLKKFLI
DGNGLTELQGNRTFSEAFPQLQKLGVSRNRFNCSYLHHLLIPPSLPESVV
LNIEPDTNLDETPHIRDVSCISQSQEVVNASFTAEESKLESQIQMLSKQL
DIVGSHSKNLELHLAFMQIFAYVMGGLVLVGVVSLITLRYLKNQRSGRYD
RSSIVFRSNATMEANLTLGSEDLQASFLDH

BO27704.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:12:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG4950-PB 574 CG4950-PB 1..574 1..574 2913 100 Plus
CG4950-PC 574 CG4950-PC 1..574 1..574 2913 100 Plus
alrm-PA 471 CG11910-PA 47..362 51..388 342 29.4 Plus
conv-PA 1092 CG8561-PA 385..856 90..541 315 25.3 Plus
conv-PB 1092 CG8561-PB 385..856 90..541 315 25.3 Plus
conv-PA 1092 CG8561-PA 191..548 63..408 267 24.4 Plus
conv-PA 1092 CG8561-PA 416..790 51..432 260 26.1 Plus
conv-PA 1092 CG8561-PA 176..519 96..429 259 26.5 Plus
conv-PA 1092 CG8561-PA 604..887 96..405 224 27 Plus
conv-PA 1092 CG8561-PA 125..463 96..424 192 22.6 Plus