Clone BO27718 Report

Search the DGRC for BO27718

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:277
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCpr65Ec-RA
Protein status:BO27718.pep: Imported from assembly
Sequenced Size:415

Clone Sequence Records

BO27718.complete Sequence

415 bp assembled on 2010-08-18

GenBank Submission: KX795828

> BO27718.complete
GAAGTTATCAGTCGACATGAACAAATTCTTCGTCCTTGCCGTCGCCGCCC
TGGCTGTTTCCTGTGTCCAGGCCGACTCCTTCGACGCCCGAGCCGAGACT
CGCGAGTATAAGAGCGACCTGAAGGAGGATGGCAGCTATGCCTATCAGTA
CCAGACGTCCAATGGCATCGCTGGCCAGGAATCGGGCGTGGGTGGTTACT
ATGCCAGCGGCTCGAACGCCTACTACGCCCCCGATGGCCAGCTCATCCAG
TTGACCTACACCGCCGACAGCAATGGCTACCACCCGGCCGGCGCCCATCT
GCCCACACCTCCTCCAATCCCGGCTTCCATCCTGAAGTCACTGGAGTACA
TCCGCACCCATCCCCAGCAGGAGAGTCGCCAGGGTCAAGGACGATTCGCA
AGCTTTCTAGACCAT

BO27718.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr65Ec-RA 384 CG8634-PA 1..381 17..397 1905 100 Plus
Cpr65Eb-RA 540 CG8638-PA 122..359 123..360 275 74.4 Plus
Cpr67Fa1-RA 405 CG7941-PA 286..353 299..366 205 86.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr65Ec-RA 566 CG8634-RA 81..461 17..397 1905 100 Plus
Cpr65Eb-RA 1004 CG8638-RA 200..437 123..360 275 74.4 Plus
Cpr67Fa1-RA 554 CG7941-RA 345..412 299..366 205 86.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7093368..7093736 29..397 1845 100 Plus
3L 28110227 3L 7088280..7088517 360..123 275 74.4 Minus
3L 28110227 3L 10890491..10890558 299..366 205 86.8 Plus
3L 28110227 3L 10892291..10892359 299..367 180 84.1 Plus
Blast to na_te.dros performed on 2014-11-28 02:37:21 has no hits.

BO27718.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:54:55 Download gff for BO27718.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Ec-RA 76..456 17..399 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:18:17 Download gff for BO27718.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Ec-RA 81..461 17..399 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:15:11 Download gff for BO27718.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Ec-RA 81..461 17..399 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:15:11 Download gff for BO27718.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7093368..7093736 29..399 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:18:17 Download gff for BO27718.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7086468..7086836 29..399 99   Plus

BO27718.pep Sequence

Translation from 16 to 415

> BO27718.pep
MNKFFVLAVAALAVSCVQADSFDARAETREYKSDLKEDGSYAYQYQTSNG
IAGQESGVGGYYASGSNAYYAPDGQLIQLTYTADSNGYHPAGAHLPTPPP
IPASILKSLEYIRTHPQQESRQGQGRFASFLDH

BO27718.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:11:03
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr65Ec-PA 127 CG8634-PA 1..127 1..127 666 100 Plus
Cpr65Eb-PA 179 CG8638-PA 1..124 1..119 374 62.1 Plus
Cpr67Fa2-PA 134 CG18349-PA 1..118 1..117 336 54.2 Plus
Cpr67Fa1-PA 134 CG7941-PA 2..118 4..117 335 53.8 Plus
Cpr67Fb-PA 122 CG18348-PA 6..116 7..118 334 57.1 Plus