Clone BO27722 Report

Search the DGRC for BO27722

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:277
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCG31709-RA
Protein status:BO27722.pep: Imported from assembly
Sequenced Size:658

Clone Sequence Records

BO27722.complete Sequence

658 bp assembled on 2010-08-18

GenBank Submission: KX795541

> BO27722.complete
GAAGTTATCAGTCGACATGGGTGCTTGTCGCCCTAGAAAATGTAGTGCAA
ATAACCGAACTATGGCAATTCGTCGCCGTAGAGCTCTAGTTAACTTGCTA
TTTTTGCGCCGTCATTTGATTGGACAGGCACTTGGAATTACGAATCGGGA
AACTCCAGACCTTAGGGTAAAATCGCGGCGACGCAATCGTAGAAGGAGAA
TGCAATTCAGAGTCCGTACACCAAGTGATAATGCAATGCGCTCAGTAAGG
CATCATGGACAGAATCCAATCAGCCCAGGATCACGGCTACAACGAAATAA
TCCACTTTGGGGACACGCCGACATTATAACCACAGATAGAGCGTTGGAAG
CTTTAAATGGACTTACTACAGGGAACAGGGAACCAAATGCATTGTCAGTA
ATGGTGCGATATACCAATGGGCGGTATTATTTAAGCTTAGAGCCAAGTGG
AAATCAGCAAAATGAGAACAATATCGTTCAAAATCCCAGTCGGAATGGTC
AGAACCAACAGGTCGAAGACGGCAATGATCGGAATCTTCAACCGGCAGCT
CAGGCAGCTGATGATGATAACAATATGACAAATTCAAATCCGGAGGTTCC
AGATGTCGGAGGCAAATCAGAAGGATCAAGGGAATGCCCAGCAAGCTTTC
TAGACCAT

BO27722.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG31709-RB 627 CG31709-PB 1..624 17..640 3120 100 Plus
CG31709-RA 627 CG31709-PA 1..624 17..640 3120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG31709-RB 1395 CG31709-RB 75..698 17..640 3120 100 Plus
CG31709-RA 960 CG31709-RA 75..698 17..640 3120 100 Plus
gcm-RB 2173 CG12245-RB 2107..2160 17..70 270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9579093..9579447 425..71 1775 100 Minus
2L 23513712 2L 9578817..9579031 640..426 1075 100 Minus
2L 23513712 2L 9579511..9579564 70..17 270 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:37:31 has no hits.

BO27722.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:54:57 Download gff for BO27722.complete
Subject Subject Range Query Range Percent Splice Strand
CG31709-RA 75..698 17..642 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:18:23 Download gff for BO27722.complete
Subject Subject Range Query Range Percent Splice Strand
CG31709-RA 75..698 17..642 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:15:15 Download gff for BO27722.complete
Subject Subject Range Query Range Percent Splice Strand
CG31709-RA 75..698 17..642 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:15:15 Download gff for BO27722.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9578814..9579031 426..642 99 <- Minus
2L 9579093..9579447 71..425 100 <- Minus
2L 9579511..9579564 17..70 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:18:23 Download gff for BO27722.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9578814..9579031 426..642 99 <- Minus
arm_2L 9579093..9579447 71..425 100 <- Minus
arm_2L 9579511..9579564 17..70 100   Minus

BO27722.pep Sequence

Translation from 16 to 658

> BO27722.pep
MGACRPRKCSANNRTMAIRRRRALVNLLFLRRHLIGQALGITNRETPDLR
VKSRRRNRRRRMQFRVRTPSDNAMRSVRHHGQNPISPGSRLQRNNPLWGH
ADIITTDRALEALNGLTTGNREPNALSVMVRYTNGRYYLSLEPSGNQQNE
NNIVQNPSRNGQNQQVEDGNDRNLQPAAQAADDDNNMTNSNPEVPDVGGK
SEGSRECPASFLDH

BO27722.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:11:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG31709-PB 208 CG31709-PB 1..208 1..208 1095 100 Plus
CG31709-PA 208 CG31709-PA 1..208 1..208 1095 100 Plus