BO27725.complete Sequence
2398 bp assembled on 2010-10-15
GenBank Submission: KX800078
> BO27725.complete
GAAGTTATCAGTCGACATGAATTCCGAGATTAATCAACGATTCCTGGCCC
GCGGCTCGCAGAAGGACAAAGGACTGGCGGTCTTCACCAGCGGCGGGGAT
TCCCAGGGCATGAATGCCGCCGTGCGAGCCTGTGTCCGTATGGCCATCTA
TTTGGGCTGCAAGGTCTACTTCATTCGTGAAGGCTACCAGGGCATGGTGG
ATGGTGGCGACTGCATCCAGGAAGCCAACTGGGCCTCAGTCTCATCCATT
ATCCATCGTGGTGGCACCATCATTGGCTCCGCCCGTTGCCAGGACTTCCG
TGAGCGTCAGGGTCGCTTGAAAGCCGCTAACAACCTGATTCAGCGAGGAA
TCACCAATCTGGTGGTCATTGGAGGCGATGGCTCCCTCACGGGCGCCAAT
CTGTTCCGTCAGGAGTGGTCCAGCCTGTTGGACGAGCTGGTCAAGAACAA
GACCATTACCACCGAGCAGCAGGAGAAGTTCAATGTCCTGCACATCGTTG
GATTGGTTGGCTCCATCGACAACGATTTCTGTGGCACTGACATGACCATC
GGCACGGACACGGCACTACATCGCATCATCGAGGCAATCGATGCCATCTC
CAGTACAGCCTACTCCCATCAGCGCACCTTCATCATGGAGGTCATGGGTC
GTCATTGCGGTTACTTAGCCATATCGGCAGCCATAGCCACAGAGGCTGAT
TTTATGTTCATACCCGAGGAGCCGGTGTCAGTCAATTGGAAGGACGAGAT
CTGTGTCAAGCTCCACCAGGAGCGATCTGCTGGCCAGCGTCTGAACATCG
TGATTGTGGCCGAGGGAGCCATGGATCGCGAGGGTCATCCCATCACAGCC
GAGGATGTAAAGAAGGTGATCGACGAGCGTCTGAAGCACGATGCCCGCAT
CACTGTCTTGGGTCACGTGCAGCGCGGTGGCAATCCCAGTGCCTTCGATC
GTATTTTGGCTTGCCGCATGGGAGCTGAGGCCACTTTGGCCCTGATGGAG
GCCACCAAGGACTCGGTGCCAGTGGTCATCTCTCTGGACGGCAACCAGGC
GGTTCGCGTGCCGCTGATGGAGTGCGTAGAGCGCACCCAGGCTGTGGCCA
AGGCCATGGCGGAGAAACGCTGGGCGGATGCCGTCAAGCTGCGCGGACGC
TCCTTCGAGCGGAATCTGGAGACCTACAAGATGCTGACGCGCTTGAAGCC
GCCCAAGGAGAACTTCGACGCCGATGGCAAGGGAATCGAAGGATACCGCC
TAGCTGTGATGCATATTGGTGCTCCGGCTTGCGGTATGAATGCCGCTGTG
CGCAGCTTCGTGCGCAATGCCATCTACCGCGGTGATGTGGTTTATGGAAT
CAACGACGGTGTCGAGGGTCTGATTGCCGGAAATGTCCGCGAGCTGGGCT
GGTCGGATGTCTCAGGATGGGTTGGTCAGGGTGGCGCCTACTTGGGTACC
AAACGCACACTGCCTGAGGGCAAGTTCAAGGAGATCGCCGCTCGTCTCAA
GGAGTTTAAGATCCAGGGTCTCCTGATCATTGGTGGCTTTGAGAGTTACC
ATGCCGCCGGACAGATCGCCGATCAGCGGGACAACTACCCACAGTTCTGC
ATCCCCATTGTGGTTATTCCATCGACGATTTCGAACAATGTGCCCGGCAC
AGAATTTTCTCTGGGATGCGACACCGGTTTAAATGAGATTACGGAGATTT
GCGACCGTATCCGTCAGTCGGCACAGGGAACCAAGCGCCGAGTGTTCGTC
ATTGAGACGATGGGTGGCTACTGTGGCTATTTGGCCACCTTGGCCGGCTT
GGCCGGCGGAGCTGATGCCGCCTACATCTACGAGGAGAAGTTCTCCATCA
AAGACCTGCAGCAGGATGTCTACCACATGGCCTCCAAGATGGCCGAGGGC
GTCTCCCGCGGTCTAATCCTGCGAAACGAGAAGGCTAGCGAGAACTACAG
CACGGACTTCATTTACCGCCTGTACTCGGAGGAGGGCAAGGGCCTCTTCA
CCTGCCGTATGAACATCCTGGGTCACATGCAGCAGGGCGGCTCACCCACT
CCCTTCGACCGCAACATGGGCACCAAAATGGCCGCCAAGTGTGTCGACTG
GCTGGCCGCCCAGATCAAGGCGAACATCGACGCCAACGGCGTAGTCAACT
GCAAGTCCCCGGACACCGCCACGCTGCTGGGAATCGTGTCGCGGCAGTAC
CGCTTCTCACCGCTGGTCGACCTCATTGCAGAGACGAACTTCGATCAACG
CATCCCGAAGAAGCAGTGGTGGCTGCGCCTGCGTCCCCTGCTGCGCATCC
TGGCCAAGCACGATTCCGCCTACGAGGAGGAGGGTATGTACATCACCGTC
GAGGAGGAGTGTGACACTGACGCCGTCGCCGCAAGCTTTCTAGACCAT
BO27725.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:03:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pfk-RC | 2367 | CG4001-PC | 1..2364 | 17..2380 | 11820 | 100 | Plus |
| Pfk-RB | 2367 | CG4001-PB | 1..2364 | 17..2380 | 11145 | 98.1 | Plus |
| Pfk-RA | 2853 | CG4001-PA | 532..2850 | 62..2380 | 10920 | 98.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:03:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pfk-RC | 3188 | CG4001-RC | 560..2923 | 17..2380 | 11820 | 100 | Plus |
| Pfk-RB | 3508 | CG4001-RB | 560..2923 | 17..2380 | 11145 | 98.1 | Plus |
| Pfk-RA | 3217 | CG4001-RA | 634..2952 | 62..2380 | 10920 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:03:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10115814..10116657 | 1401..2244 | 4220 | 100 | Plus |
| 2R | 25286936 | 2R | 10115314..10115759 | 958..1403 | 2230 | 100 | Plus |
| 2R | 25286936 | 2R | 10112612..10112960 | 159..507 | 1745 | 100 | Plus |
| 2R | 25286936 | 2R | 10114910..10115106 | 763..959 | 970 | 99.5 | Plus |
| 2R | 25286936 | 2R | 10113015..10113170 | 505..660 | 780 | 100 | Plus |
| 2R | 25286936 | 2R | 10111429..10111577 | 17..165 | 745 | 100 | Plus |
| 2R | 25286936 | 2R | 10116737..10116872 | 2245..2380 | 680 | 100 | Plus |
| 2R | 25286936 | 2R | 10114125..10114235 | 660..770 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:03:46 has no hits.
BO27725.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-15 09:23:05 Download gff for
BO27725.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pfk-RC | 533..2896 | 17..2382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:28:32 Download gff for
BO27725.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pfk-RC | 560..2923 | 17..2382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:41 Download gff for
BO27725.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pfk-RC | 560..2923 | 17..2382 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:41 Download gff for
BO27725.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10113016..10113170 | 506..660 | 100 | -> | Plus |
| 2R | 10114126..10114234 | 661..769 | 100 | -> | Plus |
| 2R | 10114917..10115105 | 770..958 | 100 | -> | Plus |
| 2R | 10115315..10115757 | 959..1401 | 100 | -> | Plus |
| 2R | 10111429..10111575 | 17..163 | 100 | -> | Plus |
| 2R | 10112617..10112958 | 164..505 | 100 | -> | Plus |
| 2R | 10115815..10116657 | 1402..2244 | 100 | -> | Plus |
| 2R | 10116737..10116872 | 2245..2382 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:28:32 Download gff for
BO27725.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5998934..5999080 | 17..163 | 100 | -> | Plus |
| arm_2R | 6000122..6000463 | 164..505 | 100 | -> | Plus |
| arm_2R | 6000521..6000675 | 506..660 | 100 | -> | Plus |
| arm_2R | 6001631..6001739 | 661..769 | 100 | -> | Plus |
| arm_2R | 6002422..6002610 | 770..958 | 100 | -> | Plus |
| arm_2R | 6002820..6003262 | 959..1401 | 100 | -> | Plus |
| arm_2R | 6003320..6004162 | 1402..2244 | 100 | -> | Plus |
| arm_2R | 6004242..6004377 | 2245..2382 | 98 | | Plus |
BO27725.pep Sequence
Translation from 16 to 2398
> BO27725.pep
MNSEINQRFLARGSQKDKGLAVFTSGGDSQGMNAAVRACVRMAIYLGCKV
YFIREGYQGMVDGGDCIQEANWASVSSIIHRGGTIIGSARCQDFRERQGR
LKAANNLIQRGITNLVVIGGDGSLTGANLFRQEWSSLLDELVKNKTITTE
QQEKFNVLHIVGLVGSIDNDFCGTDMTIGTDTALHRIIEAIDAISSTAYS
HQRTFIMEVMGRHCGYLAISAAIATEADFMFIPEEPVSVNWKDEICVKLH
QERSAGQRLNIVIVAEGAMDREGHPITAEDVKKVIDERLKHDARITVLGH
VQRGGNPSAFDRILACRMGAEATLALMEATKDSVPVVISLDGNQAVRVPL
MECVERTQAVAKAMAEKRWADAVKLRGRSFERNLETYKMLTRLKPPKENF
DADGKGIEGYRLAVMHIGAPACGMNAAVRSFVRNAIYRGDVVYGINDGVE
GLIAGNVRELGWSDVSGWVGQGGAYLGTKRTLPEGKFKEIAARLKEFKIQ
GLLIIGGFESYHAAGQIADQRDNYPQFCIPIVVIPSTISNNVPGTEFSLG
CDTGLNEITEICDRIRQSAQGTKRRVFVIETMGGYCGYLATLAGLAGGAD
AAYIYEEKFSIKDLQQDVYHMASKMAEGVSRGLILRNEKASENYSTDFIY
RLYSEEGKGLFTCRMNILGHMQQGGSPTPFDRNMGTKMAAKCVDWLAAQI
KANIDANGVVNCKSPDTATLLGIVSRQYRFSPLVDLIAETNFDQRIPKKQ
WWLRLRPLLRILAKHDSAYEEEGMYITVEEECDTDAVAASFLDH
BO27725.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:12:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pfk-PC | 788 | CG4001-PC | 1..788 | 1..788 | 4086 | 100 | Plus |
| Pfk-PB | 788 | CG4001-PB | 1..788 | 1..788 | 4003 | 97.8 | Plus |
| Pfk-PA | 950 | CG4001-PA | 178..950 | 16..788 | 3929 | 97.8 | Plus |
| Pfk-PD | 950 | CG4001-PD | 178..950 | 16..788 | 3922 | 97.4 | Plus |
| Pfk-PE | 922 | CG4001-PE | 184..922 | 50..788 | 3746 | 97.3 | Plus |
