Clone BO27732 Report

Search the DGRC for BO27732

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:277
Well:32
Vector:pDNR-Dual
Associated Gene/Transcriptsvr-RF
Protein status:BO27732.pep: Imported from assembly
Sequenced Size:1339

Clone Sequence Records

BO27732.complete Sequence

1339 bp assembled on 2010-09-23

GenBank Submission: KX796200

> BO27732.complete
GAAGTTATCAGTCGACATGCCAACTCTGGGTCTCCTGTTCGCCTCCATCG
GCATTGCCGTGCTGGCGATGGGTGTGCCGCATTGCAGGGGCTACACCATC
AAGGAGGACGAATCCTTCCTGCAGCAACCGCACTATGCTAGCCAAGAGCA
GCTGGAGGACCTGTTTGCTGGCCTGGAGAAGGCGTACCCCAATCAGGCCA
AAGTCCACTTCCTTGGTCGATCTCTAGAAGGACGAAATCTGCTCGCCCTG
CAAATCTCGCGGAACACCCGGTCGCGGAATCTCCTTACACCTCCAGTAAA
GTACATAGCCAATATGCATGGAGACGAAACGGTGGGCAGGCAGCTCCTTG
TTTATATGGCACAATATCTGCTCGGTAATCACGAAAGAATCAGCGACCTG
GGCCAGCTGGTCAACAGCACCGATATCTACTTGGTGCCCACGATGAATCC
AGATGGCTATGCGTTGTCCCAGGAAGGCAACTGCGAGTCGCTGCCCAACT
ATGTGGGTCGTGGCAATGCGGCCAACATCGATTTGAATCGCGATTTCCCC
GATCGCCTGGAGCAGAGCCATGTCCACCAGTTGCGCGCCCAGTCTCGTCA
GCCGGAAACAGCAGCCCTGGTAAATTGGATCGTTAGCAAACCGTTTGTGC
TCTCCGCCAATTTCCATGGCGGAGCTGTTGTGGCCAGCTATCCCTATGAC
AACTCCTTGGCTCACAATGAGTGCTGCGAGGAGAGTTTGACTCCGGATGA
TCGGGTCTTCAAGCAGCTGGCCCACACCTATTCTGACAACCATCCGATTA
TGAGAAAGGGCAACAATTGCAACGATAGCTTCTCGGGAGGTATCACCAAC
GGAGCCCACTGGTATGAGTTGTCCGGTGGAATGCAGGACTTTAACTATGC
GTTTAGCAACTGTTTCGAGCTGACCATCGAGTTGTCGTGCTGCAAGTATC
CGGCAGCAAGCACTTTGCCCCAGGAATGGCAGCGGAACAAGGCATCCCTG
CTGCAGCTGCTGCGCCAGGCACATATCGGCATCAAGGGCCTGGTGACCGA
TGCCAGTGGCTTTCCAATAGCCGATGCCAATGTCTACGTGGCTGGACTAG
AGGAGAAACCCATGCGCACTTCCAAACGTGGCGAATACTGGAGGCTTTTG
ACCCCGGGACTCTATAGCGTGCACGCCTCCGCTTTTGGTTACCAGACCAG
TGCCCCGCAACAGGTCCGGGTGACCAACGATAACCAGGAGGCCTTGCGCC
TGGACTTTAAGCTTGCGCCCGTCGAGACGAACTTTGATGGTATTAGCAGT
TTTTACAGTCCCTATTATTTCGCAAGCTTTCTAGACCAT

BO27732.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:03:36
Subject Length Description Subject Range Query Range Score Percent Strand
svr-RL 1308 CG4122-PL 1..1305 17..1321 6525 100 Plus
svr-RF 1308 CG4122-PF 1..1305 17..1321 6525 100 Plus
svr-RN 4320 CG4122-PN 1..1274 17..1290 6370 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:03:38
Subject Length Description Subject Range Query Range Score Percent Strand
svr-RL 2851 CG4122-RL 196..1500 17..1321 6525 100 Plus
svr-RF 3130 CG4122-RF 475..1779 17..1321 6525 100 Plus
svr-RN 4986 CG4122-RN 196..1469 17..1290 6370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:03:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 502287..502766 709..1188 2400 100 Plus
X 23542271 X 500153..500609 17..473 2285 100 Plus
X 23542271 X 501982..502221 470..709 1200 100 Plus
X 23542271 X 502835..502968 1188..1321 670 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:03:35 has no hits.

BO27732.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-23 10:58:59 Download gff for BO27732.complete
Subject Subject Range Query Range Percent Splice Strand
svr-RF 475..1779 17..1323 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:00 Download gff for BO27732.complete
Subject Subject Range Query Range Percent Splice Strand
svr-RF 475..1779 17..1323 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:09:55 Download gff for BO27732.complete
Subject Subject Range Query Range Percent Splice Strand
svr-RF 475..1779 17..1323 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:09:55 Download gff for BO27732.complete
Subject Subject Range Query Range Percent Splice Strand
X 502836..502968 1189..1323 98   Plus
X 500153..500608 17..472 100 -> Plus
X 501985..502220 473..708 100 -> Plus
X 502287..502766 709..1188 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:00 Download gff for BO27732.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 394186..394641 17..472 100 -> Plus
arm_X 396018..396253 473..708 100 -> Plus
arm_X 396320..396799 709..1188 100 -> Plus
arm_X 396869..397001 1189..1323 98   Plus

BO27732.pep Sequence

Translation from 16 to 1339

> BO27732.pep
MPTLGLLFASIGIAVLAMGVPHCRGYTIKEDESFLQQPHYASQEQLEDLF
AGLEKAYPNQAKVHFLGRSLEGRNLLALQISRNTRSRNLLTPPVKYIANM
HGDETVGRQLLVYMAQYLLGNHERISDLGQLVNSTDIYLVPTMNPDGYAL
SQEGNCESLPNYVGRGNAANIDLNRDFPDRLEQSHVHQLRAQSRQPETAA
LVNWIVSKPFVLSANFHGGAVVASYPYDNSLAHNECCEESLTPDDRVFKQ
LAHTYSDNHPIMRKGNNCNDSFSGGITNGAHWYELSGGMQDFNYAFSNCF
ELTIELSCCKYPAASTLPQEWQRNKASLLQLLRQAHIGIKGLVTDASGFP
IADANVYVAGLEEKPMRTSKRGEYWRLLTPGLYSVHASAFGYQTSAPQQV
RVTNDNQEALRLDFKLAPVETNFDGISSFYSPYYFASFLDH

BO27732.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
svr-PL 435 CG4122-PL 1..435 1..435 2305 100 Plus
svr-PF 435 CG4122-PF 1..435 1..435 2305 100 Plus
svr-PN 1439 CG4122-PN 1..425 1..425 2249 100 Plus
svr-PM 1406 CG4122-PM 1..425 1..425 2249 100 Plus
svr-PG 1439 CG4122-PG 1..425 1..425 2249 100 Plus
svr-PN 1439 CG4122-PN 443..841 29..418 672 37.3 Plus
svr-PM 1406 CG4122-PM 443..841 29..418 672 37.3 Plus