Clone BO27738 Report

Search the DGRC for BO27738

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:277
Well:38
Vector:pDNR-Dual
Associated Gene/Transcriptl(1)G0232-RB
Protein status:BO27738.pep: Imported from assembly
Sequenced Size:2440

Clone Sequence Records

BO27738.complete Sequence

2440 bp assembled on 2010-12-13

GenBank Submission: KX795528

> BO27738.complete
GAAGTTATCAGTCGACATGGTGCATCTGTATCAACGACGTCGCAACCGCG
AACAGGCTGTGAAACAATTCATTGATCTCTGCAACAATCTAGGTGCTAAC
TGCAGCACGACGACAGCCACATCCCCGTCAACTTCCTCCTCCTCAGCCAG
CAGCACGCAGAACTTAATAGCAGTAGTGCCGCCACAGTTGCAGCAGCTGC
AGGTGCAATTACCGGCGCCAGGTGGAGGAGGAGGAGCAGGTGCAGGAGGA
GGAGGTGGTGGAGGTGGGGGAGCTGCGCCTGTGAGGCGCCACATCTCGCA
TACGACAGCCGTGAAGTTTTTGTACGCCCGTAAATTTGATATACCACGAG
CAGTCTCACTGTACGAACAGCATGAACAGATCCGCCTGAAGGAGTATCTA
TATAACATCGATCCGGATGTGGAGCCCTTGCGCTCCGAGTTGCAGACCGG
CAAGTTCACAATCCTGCCCGCACGCACTTCCAGTGGCGCTGCCATCGCCC
TTTTCACCGCCAATCGACACAGTCCGCTGAGCGTTTCGCACACAACCACG
CTGCAGGGCATCGTCTATCAGCTGGACAGTGCGCTCCAGGATTCGGAGAC
GCAGCGTGCCGGGCTCGTTTTTATCTACGACATGAGCGGCTCCAAGTATT
CCAACTTCGACTACGACCTCTCCCAGAAGATTCTCACACTGCTTAAGGGC
GGCTATCCAGCGCGTCTGAAGAAGGTCCTGATCGTGACGGCGCCACTGTG
GTTCAAGGCACCCTTCAAGATCCTGCGTCTGTTCGTGCGCGAGAAGCTGC
GCGAGCGAGTGTTCACTGTATCGGTGCCTCAATTGGCGCTGCACGTGCCG
CGCAAGGCGCTGCCCATTCACTTGGGTGGCACGCTGGAGGTCGATCACGC
CACATGGTTGCTCAGCTGCCGCCAATCGATGACGAATCGTGAGGACGAGC
TGCTGGCCAATATCGTGGGTGTGGGCGGTGGATCCGGATCCGGTTCAGCA
GCTGGATCAGCAGCAATTGTGTCCACCAATGGCACGGAAACCGAGGCCGC
GACAACGGCAGCCACGATAATCAGCGCCGTCCACCAGTTGGGCGATAATA
ATACCACCGTGGTGACGGTCAGCAATGGCGTCGGTCCAGCTGGATCGGCA
TCTGGCGGAGCAACGACAGCAGCGTCGGCGGCGACGGAACCCAACGAAAA
TATCACAATCAACGGACTGAGTCCAAGCCACCGTCAGGCGGCGAATAACA
GCAGTAGCAGTAGCAGCAGTGCAGCCACAGTGGCCAATCCCCTCAAGCTC
AACACAAGTGGCTCCGCGGACAACAATAGTACCATCACGAACGCCACCAC
AGCTGCTGGAGCAGCCGGAGCAGCTGCTGGCACCACCACCAATGGCGGCG
GCGAGTTCTGGTCAGAGAATCCACCCAGCAGCGCCTCATCCGGCTTCAGT
GACGATGATAGTCTCGCCGGTCAAGAGGGCGATCCCAAGCCCATTGATCA
GATTGTTCAGATGGTTAAGCAGCGCGGACGCCATGGTCTGATTAAGGAGT
ACGCGGACATTCGGAATAGGGCGCCCGAGGGCACCTTTCTGCATGCGAGA
ATGCGGGCCAATCTGACCAAGAATCGCTACACAGACGTCCTCTGCTACGA
TCACAGTCGAGTTGTTCTGGCACACGAAGACGGCGACGAGCCGTCGGATT
ATATTAATGCGAATTTCGTCGATGGCTACAAACAAAAGAATGCCTATATT
TCAACTCAAGGTCCATTACCAAAGACATCCCAGGACTTTTGGCGCATGAT
CTGGGAACAACATTGTTTAGTTATAGTGATGACGACGCGCGTGATGGAGC
GCGGACGCGTGAAATGCGGCCAGTACTGGGAGCCGACTGAAGAAAGTTCC
TTAGAGTTTGGCGACTACCATGTGCGAACAATTAGCGTTGAGTGCAACGA
GGACTATATGGTTGCCTCGTTAGAATTGAGAAACATAAAGACTGACGAAA
TTCGCAATGTCTCACATTGGCAGTTCACCAGCTGGCCGGACTATGGCGTT
CCCAGCTCGGCCATGGCCATGCTGAACTTCCTGCAGAAGGTGCGTGAGAA
GCAGGCGCAGCTTGTCCAAGGACTGGGCGACACCTGGGCGGGTCATCCCC
GTGGACCGCCCATTGTGGTGCACTGCAGTGCAGGCATTGGACGCACAGGT
ACATTCATCACCCTGGACATTTGCATATCGCGCCTGGAGGACGTGGGCAC
GGCGGACATACGTGGAACGGTTGAGAAGATCCGGTCGCAGCGAGCCTACT
CCATTCAGATGCCCGATCAGTACGTGTTCTGTCACCTGGCCCTCATCGAA
TACGCATATTCGCGTGGAATGCTACAGACGGTCGATCTGGCTGGCTTCGA
TGAGCGCGAACCGGACTCGGAGGCAAGCTTTCTAGACCAT

BO27738.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0232-RB 2409 CG32697-PB 1..2406 17..2422 12030 100 Plus
l(1)G0232-RA 2484 CG32697-PA 113..2481 54..2422 11845 100 Plus
l(1)G0232-RG 2373 CG32697-PG 3..2370 55..2422 11840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0232-RB 2969 CG32697-RB 176..2582 16..2422 12035 100 Plus
l(1)G0232-RA 3046 CG32697-RA 291..2659 54..2422 11845 100 Plus
l(1)G0232-RG 5668 CG32697-RG 487..2854 55..2422 11840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9630194..9631097 1599..696 4520 100 Minus
X 23542271 X 9643957..9644370 466..53 2070 100 Minus
X 23542271 X 9643656..9643888 698..466 1165 100 Minus
X 23542271 X 9629668..9629899 1990..1759 1160 100 Minus
X 23542271 X 9629109..9629336 2422..2195 1140 100 Minus
X 23542271 X 9629394..9629605 2200..1989 1060 100 Minus
X 23542271 X 9629961..9630125 1762..1598 825 100 Minus
X 23542271 X 9645710..9645750 56..16 205 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:41:04 has no hits.

BO27738.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-05 08:54:57 Download gff for BO27738.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0232-RB 177..2582 17..2424 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:34:21 Download gff for BO27738.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0232-RB 177..2582 17..2424 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:10 Download gff for BO27738.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0232-RB 177..2582 17..2424 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:18:10 Download gff for BO27738.complete
Subject Subject Range Query Range Percent Splice Strand
X 9643957..9644367 56..466 100 <- Minus
X 9645711..9645749 17..55 100   Minus
X 9629107..9629332 2199..2424 99 <- Minus
X 9629396..9629603 1991..2198 100 <- Minus
X 9629668..9629897 1761..1990 100 <- Minus
X 9629963..9630123 1600..1760 100 <- Minus
X 9630194..9631095 698..1599 100 <- Minus
X 9643657..9643887 467..697 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:34:21 Download gff for BO27738.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9523140..9523365 2199..2424 99 <- Minus
arm_X 9523429..9523636 1991..2198 100 <- Minus
arm_X 9523701..9523930 1761..1990 100 <- Minus
arm_X 9523996..9524156 1600..1760 100 <- Minus
arm_X 9524227..9525128 698..1599 100 <- Minus
arm_X 9537690..9537920 467..697 100 <- Minus
arm_X 9537990..9538400 56..466 100 <- Minus
arm_X 9539744..9539782 17..55 100   Minus

BO27738.pep Sequence

Translation from 16 to 2440

> BO27738.pep
MVHLYQRRRNREQAVKQFIDLCNNLGANCSTTTATSPSTSSSSASSTQNL
IAVVPPQLQQLQVQLPAPGGGGGAGAGGGGGGGGGAAPVRRHISHTTAVK
FLYARKFDIPRAVSLYEQHEQIRLKEYLYNIDPDVEPLRSELQTGKFTIL
PARTSSGAAIALFTANRHSPLSVSHTTTLQGIVYQLDSALQDSETQRAGL
VFIYDMSGSKYSNFDYDLSQKILTLLKGGYPARLKKVLIVTAPLWFKAPF
KILRLFVREKLRERVFTVSVPQLALHVPRKALPIHLGGTLEVDHATWLLS
CRQSMTNREDELLANIVGVGGGSGSGSAAGSAAIVSTNGTETEAATTAAT
IISAVHQLGDNNTTVVTVSNGVGPAGSASGGATTAASAATEPNENITING
LSPSHRQAANNSSSSSSSAATVANPLKLNTSGSADNNSTITNATTAAGAA
GAAAGTTTNGGGEFWSENPPSSASSGFSDDDSLAGQEGDPKPIDQIVQMV
KQRGRHGLIKEYADIRNRAPEGTFLHARMRANLTKNRYTDVLCYDHSRVV
LAHEDGDEPSDYINANFVDGYKQKNAYISTQGPLPKTSQDFWRMIWEQHC
LVIVMTTRVMERGRVKCGQYWEPTEESSLEFGDYHVRTISVECNEDYMVA
SLELRNIKTDEIRNVSHWQFTSWPDYGVPSSAMAMLNFLQKVREKQAQLV
QGLGDTWAGHPRGPPIVVHCSAGIGRTGTFITLDICISRLEDVGTADIRG
TVEKIRSQRAYSIQMPDQYVFCHLALIEYAYSRGMLQTVDLAGFDEREPD
SEASFLDH

BO27738.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:47:29
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0232-PB 802 CG32697-PB 1..802 1..802 4149 100 Plus
l(1)G0232-PC 797 CG32697-PC 6..797 11..802 4083 99.7 Plus
l(1)G0232-PA 827 CG32697-PA 38..827 13..802 4081 99.9 Plus
l(1)G0232-PG 790 CG32697-PG 2..790 14..802 4080 100 Plus
l(1)G0232-PF 597 CG32697-PF 1..597 206..802 3103 100 Plus