BO27739.complete Sequence
1768 bp assembled on 2010-10-15
GenBank Submission: KX799894
> BO27739.complete
GAAGTTATCAGTCGACATGCGAGCAAAGGCACCACACGATCGCGACTTTG
GTCACAGTGGACGTGGCGGTCGCGGAGGCGATCGAGGCGGCGATGATCGG
CGAGGAGGCGGCGGCGGAGGCAATCGCTTCGGTGGCGGCGGTGGCGGTGG
CGATTACCACGGCATAAGGAATGGACGCGTCGAGAAGCGACGCGATGACC
GCGGAGGCGGCAACCGATTTGGAGGTGGTGGTGGATTCGGGGATCGCCGA
GGAGGAGGTGGCGGCGGCAGCCAAGACCTCCCCATGCGTCCGGTCGACTT
CTCCAACCTGGCTCCCTTCAAGAAGAACTTTTACCAGGAGCACCCTAACG
TAGCAAACCGATCGCCCTACGAAGTTCAGAGGTATCGCGAAGAGCAGGAG
ATCACCGTGCGCGGACAGGTGCCGAACCCCATCCAGGACTTCTCCGAGGT
CCATCTGCCCGACTACGTCATGAAGGAGATCCGCCGACAGGGCTACAAGG
CCCCCACCGCTATCCAAGCGCAGGGCTGGCCTATCGCCATGAGTGGCTCG
AACTTCGTCGGCATTGCCAAGACGGGATCCGGAAAGACCCTGGGCTACAT
CCTGCCCGCTATTGTCCACATCAACAACCAGCAGCCGCTGCAGAGGGGCG
ACGGACCTATCGCCCTCGTGCTGGCCCCCACTCGGGAGCTGGCCCAACAG
ATCCAGCAGGTGGCCACCGAATTCGGTTCCTCGTCGTATGTTCGCAACAC
CTGCGTCTTCGGCGGCGCCCCGAAGGGCGGCCAAATGCGGGATCTGCAGC
GCGGCTGCGAGATCGTCATTGCCACACCCGGACGTCTTATTGATTTCCTC
TCCGCCGGCTCTACTAACCTGAAGCGTTGCACCTACTTGGTGCTGGACGA
GGCCGATCGCATGTTAGACATGGGCTTCGAGCCCCAGATCAGAAAGATCG
TCTCACAGATCCGGCCCGACCGACAGACGCTCATGTGGAGCGCTACCTGG
CCCAAGGAGGTCAAGCAGCTTGCCGAGGACTTTTTGGGCAACTACATCCA
GATCAACATTGGATCGCTGGAGCTGTCCGCCAATCACAACATCCGCCAGG
TGGTGGACGTTTGTGACGAGTTCAGCAAGGAGGAGAAATTGAAGACCCTC
CTGTCAGACATCTACGACACCAGCGAGAGCCCCGGCAAGATTATCATATT
CGTGGAGACAAAGCGACGCGTGGACAACCTGGTGCGCTTCATCCGCAGCT
TCGGAGTCCGTTGTGGAGCTATTCACGGTGACAAGTCGCAATCAGAACGA
GACTTTGTGCTCCGTGAGTTCCGCTCGGGCAAGTCCAACATTCTGGTGGC
CACCGATGTGGCGGCCCGTGGACTAGACGTGGACGGCATCAAGTATGTCA
TCAACTTTGACTACCCGCAAAACAGCGAGGACTACATCCATCGCATCGGT
CGCACAGGACGATCCAACACAAAGGGCACCTCTTTCGCCTTCTTCACCAA
GAACAATGCCAAGCAAGCCAAGGCGCTGGTCGACGTACTCCGAGAAGCTA
ATCAGGAAATCAATCCTGCCCTGGAAAATCTGGCCCGCAACTCGCGCTAC
GACGGTGGCGGCGGACGCTCCCGTTATGGAGGCGGTGGCGGCGGCGGTCG
CTTCGGCGGCGGCGGCTTCAAGAAGGGCAGCCTGAGCAACGGACGAGGCT
TCGGAGGAGGCGGCGGCGGCGGCGGCGAAGGCAGACACTCGCGCTTCGAC
GCAAGCTTTCTAGACCAT
BO27739.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:04:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rm62-RI | 1737 | CG10279-PI | 1..1734 | 17..1750 | 8670 | 100 | Plus |
| Rm62-RE | 1737 | CG10279-PE | 1..1734 | 17..1750 | 8670 | 100 | Plus |
| Rm62-RA | 2160 | CG10279-PA | 428..2157 | 21..1750 | 8620 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:04:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rm62-RI | 3153 | CG10279-RI | 679..2413 | 16..1750 | 8675 | 100 | Plus |
| Rm62-RE | 3160 | CG10279-RE | 691..2425 | 16..1750 | 8675 | 100 | Plus |
| Rm62-RH | 2760 | CG10279-RH | 296..2025 | 21..1750 | 8620 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:04:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6004017..6005126 | 1137..28 | 5550 | 100 | Minus |
| 3R | 32079331 | 3R | 6003673..6003911 | 1376..1138 | 1195 | 100 | Minus |
| 3R | 32079331 | 3R | 6001166..6001365 | 1750..1551 | 1000 | 100 | Minus |
| 3R | 32079331 | 3R | 6001557..6001739 | 1556..1374 | 915 | 100 | Minus |
| X | 23542271 | X | 7928923..7929222 | 1099..800 | 420 | 76 | Minus |
| X | 23542271 | X | 7929323..7929525 | 705..503 | 295 | 76.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:04:09 has no hits.
BO27739.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-15 09:23:06 Download gff for
BO27739.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rm62-RE | 425..2158 | 17..1752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:28:33 Download gff for
BO27739.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rm62-RE | 692..2425 | 17..1752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:51 Download gff for
BO27739.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rm62-RE | 692..2425 | 17..1752 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:51 Download gff for
BO27739.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6001164..6001360 | 1556..1752 | 98 | <- | Minus |
| 3R | 6001558..6001736 | 1377..1555 | 100 | <- | Minus |
| 3R | 6003673..6003911 | 1138..1376 | 100 | <- | Minus |
| 3R | 6004017..6005126 | 28..1137 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:28:33 Download gff for
BO27739.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1826886..1827082 | 1556..1752 | 98 | <- | Minus |
| arm_3R | 1827280..1827458 | 1377..1555 | 100 | <- | Minus |
| arm_3R | 1829395..1829633 | 1138..1376 | 100 | <- | Minus |
| arm_3R | 1829739..1830848 | 28..1137 | 100 | | Minus |
BO27739.pep Sequence
Translation from 16 to 1768
> BO27739.pep
MRAKAPHDRDFGHSGRGGRGGDRGGDDRRGGGGGGNRFGGGGGGGDYHGI
RNGRVEKRRDDRGGGNRFGGGGGFGDRRGGGGGGSQDLPMRPVDFSNLAP
FKKNFYQEHPNVANRSPYEVQRYREEQEITVRGQVPNPIQDFSEVHLPDY
VMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIV
HINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGG
APKGGQMRDLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRML
DMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGS
LELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSESPGKIIIFVETKR
RVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAA
RGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQ
AKALVDVLREANQEINPALENLARNSRYDGGGGRSRYGGGGGGGRFGGGG
FKKGSLSNGRGFGGGGGGGGEGRHSRFDASFLDH
BO27739.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:12:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rm62-PI | 578 | CG10279-PI | 1..578 | 1..578 | 3060 | 100 | Plus |
| Rm62-PE | 578 | CG10279-PE | 1..578 | 1..578 | 3060 | 100 | Plus |
| Rm62-PF | 578 | CG10279-PF | 1..578 | 1..578 | 3043 | 99.5 | Plus |
| Rm62-PB | 578 | CG10279-PB | 1..578 | 1..578 | 3043 | 99.5 | Plus |
| Rm62-PC | 578 | CG10279-PC | 1..578 | 1..578 | 3043 | 99.5 | Plus |
