Clone BO27743 Report

Search the DGRC for BO27743

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:277
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG34232-RB
Protein status:BO27743.pep: Imported from assembly
Sequenced Size:421

Clone Sequence Records

BO27743.complete Sequence

421 bp assembled on 2010-08-18

GenBank Submission: KX797090

> BO27743.complete
GAAGTTATCAGTCGACATGTTTGGCCCGCTGCAGATTATCGTTTTTGCCA
CTATCTTGGTGGCCGTGGCCATGGCCATGCAGCCACTGGAGGACAATGAG
CGAACCCATCATCTGAACCACAAGCGCCAGTTGTCGCAACAGCACCACCA
CCACCACCAAAAGCTCCAGGAGGTGAGGCATTCGGGCCATGATAGTCTGA
AACATGGTGGTTCCCACGTTAAGGAGCATCAAGCGCATCACTCTGAGCGA
AAGGCCAGGCAGAGCCACAAGGAGCCGGGCCACAAGAAGAGTCACCACCA
GAAGGAGCACCGCCAGCAGCAGGACAACCACACCCGCAAATCCCGATCGC
ATTCCAAGGGCAGCAAGCAGCATCACAAGCGGCACACGGGATCGCGTCGC
CACGCAAGCTTTCTAGACCAT

BO27743.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG34232-RB 390 CG34232-PB 1..387 17..403 1935 100 Plus
CG34232-RC 384 CG34232-PC 12..381 34..403 1850 100 Plus
CG34232-RA 384 CG34232-PA 12..381 34..403 1850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG34232-RB 831 CG34232-RB 229..615 17..403 1935 100 Plus
CG34232-RC 775 CG34232-RC 190..559 34..403 1850 100 Plus
CG34232-RA 702 CG34232-RA 117..486 34..403 1850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12165125..12165511 403..17 1935 100 Minus
Blast to na_te.dros performed 2014-11-28 02:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy12 10218 gypsy12 GYPSY12 10218bp 696..737 301..342 111 73.8 Plus
gypsy12 10218 gypsy12 GYPSY12 10218bp 8578..8619 301..342 111 73.8 Plus

BO27743.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:55:00 Download gff for BO27743.complete
Subject Subject Range Query Range Percent Splice Strand
CG34232-RB 198..578 23..405 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:18:27 Download gff for BO27743.complete
Subject Subject Range Query Range Percent Splice Strand
CG34232-RB 215..595 23..405 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:15:18 Download gff for BO27743.complete
Subject Subject Range Query Range Percent Splice Strand
CG34232-RB 235..615 23..405 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:15:18 Download gff for BO27743.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12165123..12165505 23..405 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:18:27 Download gff for BO27743.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8052628..8053010 23..405 99   Minus

BO27743.pep Sequence

Translation from 16 to 421

> BO27743.pep
MFGPLQIIVFATILVAVAMAMQPLEDNERTHHLNHKRQLSQQHHHHHQKL
QEVRHSGHDSLKHGGSHVKEHQAHHSERKARQSHKEPGHKKSHHQKEHRQ
QQDNHTRKSRSHSKGSKQHHKRHTGSRRHASFLDH

BO27743.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:11:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG34232-PB 129 CG34232-PB 1..129 1..129 711 100 Plus
CG34232-PC 127 CG34232-PC 5..127 7..129 678 100 Plus
CG34232-PA 127 CG34232-PA 5..127 7..129 678 100 Plus