BO27748.complete Sequence
2140 bp assembled on 2010-09-13
GenBank Submission: KX797688
> BO27748.complete
GAAGTTATCAGTCGACATGATATCGTTTCTGTTAAAACGCCGAGCTTGTG
ATGCTTACAAGATTTCATTAGGACTAACTCGTGCATATAGAGCCTTAACA
GAAGTAAAAAGCCTTCAAAATGCCTTACGACCTGGTAATAAAACTGGAAA
TATCAAGCTGGTAAACATATACCGAACTTCTAGCATACAAAATGTGAAGA
AGAACCAACTAAGTGACGCTGAAAGCGTTATTCCACTCTTATTGCGGCCA
GCCAAACCTGTGCTGATTATGAGAGAAGGATCTCAAACCGATTGTAACGA
CGATTTGCTGTCCTCTGAGCAAAGAGCCAAAAAAAGGGAAAGCATAAAAA
AATCCGAAGTAGATTGCCCAAAATTTCCAGCTGAGAAACTTCCGCCCACA
ACGAAATTTCCTATTAATGAAAATGCCAAGAAGGTTTTAGATCCAGCCGA
CCAAAGAGAACTCGAGGCCAATTTGTTAAAAAGGCTTAAAGATATGGCTA
AAAGAAAGAAATCTCGACTAGATGAGAAAGTTGACGAGCTGAGGGATAAT
TTTATAGGCTGGAATTATGCTGCTCTACAAGGAAGAACTATTGTGACTGT
GGATGCCAAGGAATCAACTCCACCGAAAGGATCTGGGCCGGCCACCCCGG
CAGGCTCTCCTCCACCTAAAAATGTTTCTGCACCGCCGACGGGCGGTTCT
CCGCCTGCCAAAAGCGGCGCTCCACCACCCCCAAAGGGGCCACCGCCCGG
AACTCCACCACCGCAGACGAAAACTACTTTTGGACCACTTGCTGATGCTG
ATCGAATCTTTACCAATTTATACGGACGGCACGATTGGCGATTGAAGGCA
GCAATGAAGCGCGGTGACTGGTACAAGACGAAGGAGATCATAGCCAAGGG
TGACAAGTGGATAGTCAACGAGATTAAGACATCTGGACTGCGAGGACGCG
GTGGCGCCGGATTTCCCAGTGGACTTAAGTGGTCATTTATGCATAAACCG
CCTGATGGAAGACCCAAGTTTCTGGTGGTCAATGCGGATGAAGGAGAGCC
CGGTACTTGCAAGGATCGTGAGATAATGCGCCATGATCCACACAAACTGG
TAGAGGGATGTCTCATTGCTGGACGGGCTATGGGTGCCAACACTGGTTTT
ATTTACATTCGCGGAGAGTTTTACAACGAAGCTTGCAATCTTCAGTATGC
CATTATTGAGGCCTATAAGGCTGGCTACCTGGGAAAGAATGCCTGCGGTT
CTGGGTTCGATTTCGATCTTTATGTGCAACGTGGAGCAGGAGCCTATATT
TGCGGTGAGGAAACCTCTCTGATTGAATCCCTGGAGGGCAAGGCGGGTAA
GCCAAGGAACAAGCCTCCCTTTCCGGCTGATATCGGCGTCTTTGGCTGTC
CGTCTACGGTGACCAATGTGGAAACGGTGGCCGTGTCTCCCACTATTTGC
CGGCGTGGTGGCAATTGGTTTGCCAGCTTTGGACGTACCCGAAACTCTGG
CACCAAGCTGTTTAATATCTCTGGTCATGTTTGCAACCCTTGTACCGTCG
AGGAGGAGATGTCCATGCCAACCAGAGAGCTTATCGAACGCCATGCTGGC
GGAGTGATCGGGGGCTGGGACAATCTACTGGCCATCATTCCGGGTGGCTC
CTCCACTCCCTGCATTACCAAGGAGCACGCCTCGAGTGCGATTCACGACT
ACGATGGGCTGATGGCAGTGCGTTCGTCCATGGGAACGGGTGCCTTAATT
GTTATGAATAAGGATACGGACATTATCAAGGCCATTGCCCGATTATCGGC
TTTCTATAAGCACGAGAGCTGCGGCCAGTGCACTCCTTGCCGCGAGGGTC
TCCACTGGGTGAACATGATCATGCATAGATTTGTGACAGGACAGGCGCAA
ATTGCAGAGATCGATATGCTGTTCGAACTGACGAAGCAGATCGAGGGACA
TACCATTTGTGCCCTGGCCGATGGTGCTGCTTGGCCGCCCCAAGGACTCA
TCCGGAACTTCCGACCGGTCATCGAGGAGAGGATCAAGAAGCGGGCGGCC
GAGGACCAAGCTAAAGCTGAAGCACTCGAAGCCGAACGTTTCCCTTGTCA
AACGGTGACTCCTTGTCCAGAAGCAAGCTTTCTAGACCAT
BO27748.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:22:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11423-RA | 2109 | CG11423-PA | 1..2106 | 17..2122 | 10530 | 100 | Plus |
| CG9140-RB | 1425 | CG9140-PB | 100..1386 | 740..2026 | 1035 | 72 | Plus |
| CG9140-RA | 1425 | CG9140-PA | 100..1386 | 740..2026 | 1035 | 72 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:22:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11423-RA | 2143 | CG11423-RA | 17..2123 | 16..2122 | 10535 | 100 | Plus |
| CG9140-RB | 1553 | CG9140-RB | 133..1419 | 740..2026 | 1035 | 72 | Plus |
| CG9140-RA | 1590 | CG9140-RA | 170..1456 | 740..2026 | 1035 | 72 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:22:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17595283..17597389 | 16..2122 | 10535 | 100 | Plus |
| 2L | 23513712 | 2L | 6061405..6062023 | 1660..1042 | 710 | 74.3 | Minus |
| 2L | 23513712 | 2L | 6062074..6062382 | 1048..740 | 315 | 73.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:22:31 has no hits.
BO27748.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-16 10:43:31 Download gff for
BO27748.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11423-RA | 18..2123 | 17..2124 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:54 Download gff for
BO27748.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11423-RA | 18..2123 | 17..2124 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:16:40 Download gff for
BO27748.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11423-RA | 18..2123 | 17..2124 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:16:40 Download gff for
BO27748.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17595284..17597389 | 17..2124 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:54 Download gff for
BO27748.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13482789..13484894 | 17..2124 | 99 | | Plus |
BO27748.pep Sequence
Translation from 16 to 2140
> BO27748.pep
MISFLLKRRACDAYKISLGLTRAYRALTEVKSLQNALRPGNKTGNIKLVN
IYRTSSIQNVKKNQLSDAESVIPLLLRPAKPVLIMREGSQTDCNDDLLSS
EQRAKKRESIKKSEVDCPKFPAEKLPPTTKFPINENAKKVLDPADQRELE
ANLLKRLKDMAKRKKSRLDEKVDELRDNFIGWNYAALQGRTIVTVDAKES
TPPKGSGPATPAGSPPPKNVSAPPTGGSPPAKSGAPPPPKGPPPGTPPPQ
TKTTFGPLADADRIFTNLYGRHDWRLKAAMKRGDWYKTKEIIAKGDKWIV
NEIKTSGLRGRGGAGFPSGLKWSFMHKPPDGRPKFLVVNADEGEPGTCKD
REIMRHDPHKLVEGCLIAGRAMGANTGFIYIRGEFYNEACNLQYAIIEAY
KAGYLGKNACGSGFDFDLYVQRGAGAYICGEETSLIESLEGKAGKPRNKP
PFPADIGVFGCPSTVTNVETVAVSPTICRRGGNWFASFGRTRNSGTKLFN
ISGHVCNPCTVEEEMSMPTRELIERHAGGVIGGWDNLLAIIPGGSSTPCI
TKEHASSAIHDYDGLMAVRSSMGTGALIVMNKDTDIIKAIARLSAFYKHE
SCGQCTPCREGLHWVNMIMHRFVTGQAQIAEIDMLFELTKQIEGHTICAL
ADGAAWPPQGLIRNFRPVIEERIKKRAAEDQAKAEALEAERFPCQTVTPC
PEASFLDH
BO27748.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:28:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11423-PA | 702 | CG11423-PA | 1..702 | 1..702 | 3738 | 100 | Plus |
| CG9140-PB | 474 | CG9140-PB | 32..469 | 240..677 | 1934 | 79.7 | Plus |
| CG9140-PA | 474 | CG9140-PA | 32..469 | 240..677 | 1934 | 79.7 | Plus |
| CG8102-PA | 481 | CG8102-PA | 23..478 | 221..677 | 1211 | 51 | Plus |
| CG8102-PB | 462 | CG8102-PB | 23..459 | 221..677 | 1108 | 47.9 | Plus |
