BO27751.complete Sequence
2206 bp assembled on 2010-09-13
GenBank Submission: KX799359
> BO27751.complete
GAAGTTATCAGTCGACATGGATAGAAATCCCGTGAGGCAGTCGACGTCAT
CCGGCACCGTAGAAGGTGAATCCAGCGAACAGGAGGAGCAGAAGACGCCC
AGTGCGGCCGAATATATGAGGAACTTCAAGAACATCATAGCGCCGGGCAA
CGAGGCCTCCATGACCAGGGAGTTCAATCCGCAGGTGGCATACGAATTCG
AAAAGTATCTCAATCCGCAAAAGCTCAAGCAGCACGTCCTTAGGAGCGAG
AAGCTGCGATCCATTCTGGAGCACTATGCCAAGGAGTCGGGCACGCCGCT
CAAGCAGATGGAGCGTCAGGCCCGGGCGATCATTGATGAAATCGGCCTCG
ATCGGAATATGGCCATCATCCGGTGGTGCGGCATTGCCATTACGGCGATC
GGCAAGCGGATCTGCGATGGATTCTATGTCAATTCGGCTAGCATGGCCAA
TGTGCGCAAGGATATGGGCAAGTGCCCGGTGCTCTATCTGCCAAGTCATC
GCAGCTACATGGACTTCATCCTGATGTCCTACATCTGCTATTACTACGAC
ATCGAGATACCAGGAATAGCAGCCGGCATGGATTTCCACTCCATGTTCGG
AATGGGCACCATGTTGAGGAAAACAGGAGCGTTCTTCATGCGCCGCAGCT
TCTCCAACGATGAGCTATACTGGGATATTTTCCGGGAGTATATGTACGCG
CTGGTGGCAAACTACCACATCGGCGTGGAGTTCTTCATTGAGGGCACGCG
CTCCAGGAATTTCAAAGCTCTGGTTCCCAAAATTGGACTACTCTCGATGG
CTCTGTTGCCATATTTCACGGGCGAAGTGCCGGATGTGATGATTGTGCCA
GTGAGTGTGGCCTACGAACGCGTCCTGGAGGAGCAACTGTTCGTCTATGA
GCTGCTGGGTGTGCCCAAGCCCAAGGAGTCGACAAAGGGCTTTTTCAAGG
CCCTAAAAATCATCGACGAGCGATTTGGCAAGATGTTCCTCGACTTCGGA
GAGCCCATCTCGGTCAAGGAGTTTTTCGGACACGACAGCGCGCAGCGAAT
GCAGCGAGCAGGCGTGGGTGGTCACTTGCAGAAGCTGAACCGCCAGGAGG
TGGAACTAGTCAAACAGCTGGCCAATGAGATTATCTACCAGCAGCAGCGT
CGCATTGTGATCTCCACGTTCAATCTGCTTAGCCTCTACTACGCCAGTCA
ATTGTATGCCCAAAGGAGTGTCACTCTGGACGAGCTAGCACGAGGTGTTC
TGCATCTGAAGCGAATCTTCGAGCAGCTGGGCGCCCATGTTAGCACGACT
CCGAGCAGCATTAAGGCGGATGTGATTGATGCTGTGGAGATACACTCGAA
TATTTTACATTTCGCGACTGGCCGCCTGCAGTTTACGCCCATGGCAGCCA
AGCAACTGGCGGAGCAGATCGATGTTAAGCGCCTGAAAGCCCATGCCCTG
TGTCCACAGACCATGGCGGTGGCTGTGCCCATGCTGGCACTGCAGCTCTA
CATTAATCCCTGCATGTTCTGGCTGGCCAGACCCGCCTACCTGCTGCTGG
CAGCGCTCAAGGAGCAAAAGAATCAACAGAAGCAATCGACGGACATCTCG
TACGATGCCAGTTTGTGTGCCCTGCATGCGCACGTGACCACCATGGACGC
GCTATTCCAGCACGAGTTCATCATTGAATCGAATCGCGAGGCGGCCGAGT
TTGAGACGCATCTGCAGCTGCTGCTGGACGAACGAGTTGTGGAGGTAGAG
ACCAGTGGCCGGATCAATGTGCAGGACAATGAATGCTCGCATGTCATTCT
GGCCGCCCTGGCGCCATTCCTCTGCCTCTACTACCAACTGGTGGTCACGT
TAAGAAAGATCCCTTTGGAGCTGGAGTTCAGTAACAAGGAGCTGCTCGTG
CGCGTCCAGCAGCATGTGGAGCAGCTCCTACAGCAACCCGGAGCCTCCGC
CTCTCATGTGCACCCATATTGCCTGGCCCTGGACAATCTGAACATTGCCA
TCTATGCGCTAATCCAGAGGGGCTACCTAGTGAAGAGCAGGGACTCTGGT
CAGATGAAGATCGCGTCCACTCCGGGAAAGTGCCTGCGAGAACTGGAAAC
GCAGCTTCTCGAGTACTGTCAACTAATGCCATTTGCTCAATACTCGACGG
CGGCCAACCAGCAGGCCCAGTTCCACATAGCCAAGTTAGCAAGCTTTCTA
GACCAT
BO27751.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:23:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dhap-at-RC | 2424 | CG4625-PC | 1..2172 | 17..2188 | 10860 | 100 | Plus |
| Dhap-at-RB | 2175 | CG4625-PB | 1..2172 | 17..2188 | 10860 | 100 | Plus |
| Dhap-at-RA | 2175 | CG4625-PA | 1..2172 | 17..2188 | 10860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:23:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dhap-at-RC | 3516 | CG4625-RC | 356..2527 | 17..2188 | 10860 | 100 | Plus |
| Dhap-at-RB | 3441 | CG4625-RB | 281..2452 | 17..2188 | 10860 | 100 | Plus |
| Dhap-at-RA | 3516 | CG4625-RA | 356..2527 | 17..2188 | 10860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:23:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25486995..25488272 | 1858..581 | 6390 | 100 | Minus |
| 3R | 32079331 | 3R | 25488524..25489088 | 581..17 | 2825 | 100 | Minus |
| 3R | 32079331 | 3R | 25486607..25486938 | 2188..1857 | 1660 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:23:27 has no hits.
BO27751.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-16 10:43:32 Download gff for
BO27751.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhap-at-RA | 1..2172 | 17..2190 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:57 Download gff for
BO27751.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhap-at-RA | 356..2527 | 17..2190 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:17:02 Download gff for
BO27751.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhap-at-RA | 356..2527 | 17..2190 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:17:02 Download gff for
BO27751.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25486605..25486936 | 1859..2190 | 99 | <- | Minus |
| 3R | 25486995..25488271 | 582..1858 | 100 | <- | Minus |
| 3R | 25488524..25489088 | 17..581 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:57 Download gff for
BO27751.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21312327..21312658 | 1859..2190 | 99 | <- | Minus |
| arm_3R | 21312717..21313993 | 582..1858 | 100 | <- | Minus |
| arm_3R | 21314246..21314810 | 17..581 | 100 | | Minus |
BO27751.pep Sequence
Translation from 16 to 2206
> BO27751.pep
MDRNPVRQSTSSGTVEGESSEQEEQKTPSAAEYMRNFKNIIAPGNEASMT
REFNPQVAYEFEKYLNPQKLKQHVLRSEKLRSILEHYAKESGTPLKQMER
QARAIIDEIGLDRNMAIIRWCGIAITAIGKRICDGFYVNSASMANVRKDM
GKCPVLYLPSHRSYMDFILMSYICYYYDIEIPGIAAGMDFHSMFGMGTML
RKTGAFFMRRSFSNDELYWDIFREYMYALVANYHIGVEFFIEGTRSRNFK
ALVPKIGLLSMALLPYFTGEVPDVMIVPVSVAYERVLEEQLFVYELLGVP
KPKESTKGFFKALKIIDERFGKMFLDFGEPISVKEFFGHDSAQRMQRAGV
GGHLQKLNRQEVELVKQLANEIIYQQQRRIVISTFNLLSLYYASQLYAQR
SVTLDELARGVLHLKRIFEQLGAHVSTTPSSIKADVIDAVEIHSNILHFA
TGRLQFTPMAAKQLAEQIDVKRLKAHALCPQTMAVAVPMLALQLYINPCM
FWLARPAYLLLAALKEQKNQQKQSTDISYDASLCALHAHVTTMDALFQHE
FIIESNREAAEFETHLQLLLDERVVEVETSGRINVQDNECSHVILAALAP
FLCLYYQLVVTLRKIPLELEFSNKELLVRVQQHVEQLLQQPGASASHVHP
YCLALDNLNIAIYALIQRGYLVKSRDSGQMKIASTPGKCLRELETQLLEY
CQLMPFAQYSTAANQQAQFHIAKLASFLDH
BO27751.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:28:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dhap-at-PC | 807 | CG4625-PC | 1..724 | 1..724 | 3708 | 100 | Plus |
| Dhap-at-PB | 724 | CG4625-PB | 1..724 | 1..724 | 3708 | 100 | Plus |
| Dhap-at-PA | 724 | CG4625-PA | 1..724 | 1..724 | 3708 | 100 | Plus |
| mino-PB | 757 | CG5508-PB | 101..404 | 95..412 | 297 | 27.6 | Plus |
| mino-PC | 786 | CG5508-PC | 130..433 | 95..412 | 297 | 27.6 | Plus |
