BO27754.complete Sequence
2449 bp assembled on 2010-10-15
> BO27754.complete
GAAGTTATCAGTCGACATGTTGCAATCAACGGTTCCGTCATACCACCATC
CCCATCCGCATCACGGCCACCCTCATGCTCATCCCCATAGCCACCACCAT
GCGTCGATGCACCATGCCCATGCCCACCATGCTGCCGCTGCAGCTGCCGC
CCACCAGCGTGCGGTGCAGCAGGCCAACTATGGTGGTGGAGTCGGCGTGG
GCGTTGGCGTCGGTGTGGGCGTGGGCAGTGGCACGGGCAGCGCCTTCCAG
AGGCAGCCAGCTGCCGGCGGATTCCATCATGGCCATCATCAGGGCCGCAT
GCCGCGTCTGAATCGCAGCGTTTCGATGGAGCGTCTTCAGGACTTTGCCA
CCTACTTCAGTCCCATTCCGAGCATGGTGGGCGGGGTATCCGATATGTCA
CCGTATCCGCACCACTATCCCGGCTACTCCTATCAGGCGAGTCCCTCGAA
CGGAGCACCCGGCACTCCTGGCCAGCATGGTCAGTATGGCAGTGGCGCCA
ATGCTACCTTGCAGCCACCACCACCACCGCCGCCGCCGCATCACGCTGCC
ATGTTGCATCACCCGAATGCCGCCTTGGGCGACATCTGCCCCACCGGGCA
GCCCCACTACGGGCACAATCTGGGATCGGCTGTCACCTCCAGCATGCATC
TGACCAACTCCAGTCACGAGGCCGATGGAGCCGCCGCTGCTGCTGCCGCC
TACAAAGTGGAGCACGATTTGATGTACTACGGGAACACCTCATCGGACAT
TAACCAGACGGATGGCTTTATTAACTCCATTTTTACCGACGAGGATCTGC
ACTTGATGGACATGAATGAGAGCTTCTGTCGCATGGTTGACAACAGCACT
AGCAACAACTCCTCGGTTCTGGGCTTGCCCAGCAGTGGACATGTTAGCAA
CGGCTCCGGTAGCTCGGCACAACTTGGGGCGGGAAATCCGCACGGTAACC
AGGCCAACGGAGCGTCCGGCGGCGTTGGCTCGATGAGCGGATCAGCTGTG
GGCGCTGGAGCTACGGGAATGACCGCCGATCTTTTGGCAAGCGGCGGTGC
AGGAGCACAAGGCGGTGCGGATCGCTTGGACGCGTCCAGCGACAGTGCTG
TCAGTTCGATGGGCTCCGAGCGAGTGCCGTCCCTCTCCGACGGCGAGTGG
GGTGAGGGCAGTGACTCCGCCCAGGATTACCATCAGGGCAAGTACGGAGG
CCCCTACGACTTCAGCTACAACAATAATTCACGGCTTAGCACCGCCACAC
GTCAGCCGCCGGTGGCGCAGAAGAAGCATCAGCTGTACGGCAAGAGGGAT
CCCCATAAGCAGACGCCATCGGCTTTGCCACCAACAGCTCCACCAGCAGC
CGCGACTGCAGTCCAATCGCAGAGTATCAAGTACGAGTACGATGCTGGGT
ACGCCTCCTCGGGAATGGCCAGCGGTGGAATCAGTGAGCCAGGAGCGATG
GGACCCGCTCTATCCAAGGACTATCATCATCATCAGCCTTACGGCATGGG
AGCCAGCGGCAGCGCCTTTTCCGGCGACTATACAGTACGACCATCGCCAA
GGACTTCGCAGGATTTGGTGCAACTAAATCATACCTACTCGCTACCCCAG
GGAAGTGGATCCCTTCCCAGACCCCAGGCACGCGATAAGAAGCCCCTGGT
CGCCACTAAAACCGCATCGAAGGGAGCGAGTGCCGGCAACAGCAGCAGTG
TTGGCGGAAACAGCAGCAACTTGGAGGAAGAGCATCTGACACGCGATGAA
AAGCGCGCTCGATCCCTGAACATACCCATTTCAGTGCCGGACATCATTAA
CCTGCCCATGGACGAGTTCAACGAGCGCTTGTCGAAATACGACCTTAGCG
AGAACCAGTTGTCGCTGATTCGCGACATTCGTCGGCGTGGAAAGAACAAG
GTCGCTGCCCAGAATTGCAGGAAACGCAAATTGGACCAGATCCTGACTCT
AGAGGATGAGGTGAACGCGGTGGTTAAGCGCAAGACCCAACTTAATCAGG
ACCGCGATCATTTGGAGAGCGAACGCAAGCGCATCTCGAACAAGTTTGCC
ATGCTGCATCGTCATGTCTTCCAGTACCTACGGGATCCCGAGGGAAATCC
CTGCTCGCCGGCGGACTACAGTTTGCAACAGGCTGCCGATGGCTCCGTCT
ACTTGCTACCACGTGAAAAGTCCGAGGGTAACAACACGGCTACGGCTGCC
TCCAATGCTGTTTCGTCGGCCAGTGGGGGAAGTCTTAATGGCCACGTGCC
CACTCAGGCTCCCATGCACAGCCATCAGAGCCACGGAATGCAGGCGCAAC
ATGTTGTCGGTGGGATGTCGCAGCAGCAGCAACAGCAGTCGAGGCTGCCT
CCACACCTGCAACAGCAGCATCATCTGCAGTCGCAGCAACAGCAGCCGGG
AGGTCAGCAGCAACAGCAGCACCGCAAGGAAGCAAGCTTTCTAGACCAT
BO27754.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:04:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cnc-RN | 3402 | CG43286-PN | 981..3399 | 13..2431 | 11960 | 99.6 | Plus |
| cnc-RM | 3402 | CG43286-PM | 981..3399 | 13..2431 | 11960 | 99.6 | Plus |
| cnc-RO | 4293 | CG43286-PO | 1731..4149 | 13..2431 | 11960 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:05:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cnc-RN | 4746 | CG43286-RN | 1293..3711 | 13..2431 | 11960 | 99.6 | Plus |
| cnc-RM | 4737 | CG43286-RM | 1284..3702 | 13..2431 | 11960 | 99.6 | Plus |
| cnc-RO | 6701 | CG43286-RO | 2416..4834 | 13..2431 | 11960 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:04:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23187877..23189129 | 2074..822 | 6220 | 99.8 | Minus |
| 3R | 32079331 | 3R | 23191841..23192284 | 733..290 | 2175 | 99.3 | Minus |
| 3R | 32079331 | 3R | 23187447..23187806 | 2431..2072 | 1785 | 99.7 | Minus |
| 3R | 32079331 | 3R | 23197286..23197566 | 293..13 | 1375 | 99.3 | Minus |
| 3R | 32079331 | 3R | 23191695..23191784 | 822..733 | 450 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:04:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6859 | 2321..2427 | 242 | 72.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2289..2468 | 2255..2435 | 227 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6849 | 2321..2434 | 223 | 68.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6886 | 2321..2431 | 222 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2427 | 2321..2423 | 207 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6847..6944 | 2320..2417 | 202 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6900 | 2321..2421 | 198 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6817..6931 | 2320..2431 | 198 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2409..2513 | 2321..2427 | 178 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2483 | 2321..2428 | 171 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2781..2871 | 2321..2417 | 164 | 68 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2456..2536 | 2320..2397 | 163 | 70.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1090..1163 | 2320..2393 | 154 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2594..2665 | 2320..2391 | 144 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2805..2915 | 2321..2435 | 134 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1587 | 2324..2372 | 119 | 71.4 | Plus |
BO27754.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-15 09:23:07 Download gff for
BO27754.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnc-RB | 854..3263 | 22..2433 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:28:38 Download gff for
BO27754.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnc-RO | 2425..4834 | 22..2433 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:06:09 Download gff for
BO27754.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cnc-RO | 2425..4834 | 22..2433 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:06:09 Download gff for
BO27754.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23187444..23187803 | 2075..2433 | 99 | <- | Minus |
| 3R | 23187877..23189129 | 822..2074 | 99 | <- | Minus |
| 3R | 23191696..23191783 | 734..821 | 100 | <- | Minus |
| 3R | 23191841..23192281 | 293..733 | 99 | <- | Minus |
| 3R | 23197287..23197557 | 22..292 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:28:38 Download gff for
BO27754.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19013166..19013525 | 2075..2433 | 99 | <- | Minus |
| arm_3R | 19013599..19014851 | 822..2074 | 99 | <- | Minus |
| arm_3R | 19017418..19017505 | 734..821 | 100 | <- | Minus |
| arm_3R | 19017563..19018003 | 293..733 | 99 | <- | Minus |
| arm_3R | 19023009..19023279 | 22..292 | 99 | | Minus |
BO27754.pep Sequence
Translation from 16 to 2449
> BO27754.pep
MLQSTVPSYHHPHPHHGHPHAHPHSHHHASMHHAHAHHAAAAAAAHQRAV
QQANYGGGVGVGVGVGVGVGSGTGSAFQRQPAAGGFHHGHHQGRMPRLNR
SVSMERLQDFATYFSPIPSMVGGVSDMSPYPHHYPGYSYQASPSNGAPGT
PGQHGQYGSGANATLQPPPPPPPPHHAAMLHHPNAALGDICPTGQPHYGH
NLGSAVTSSMHLTNSSHEADGAAAAAAAYKVEHDLMYYGNTSSDINQTDG
FINSIFTDEDLHLMDMNESFCRMVDNSTSNNSSVLGLPSSGHVSNGSGSS
AQLGAGNPHGNQANGASGGVGSMSGSAVGAGATGMTADLLASGGAGAQGG
ADRLDASSDSAVSSMGSERVPSLSDGEWGEGSDSAQDYHQGKYGGPYDFS
YNNNSRLSTATRQPPVAQKKHQLYGKRDPHKQTPSALPPTAPPAAATAVQ
SQSIKYEYDAGYASSGMASGGISEPGAMGPALSKDYHHHQPYGMGASGSA
FSGDYTVRPSPRTSQDLVQLNHTYSLPQGSGSLPRPQARDKKPLVATKTA
SKGASAGNSSSVGGNSSNLEEEHLTRDEKRARSLNIPISVPDIINLPMDE
FNERLSKYDLSENQLSLIRDIRRRGKNKVAAQNCRKRKLDQILTLEDEVN
AVVKRKTQLNQDRDHLESERKRISNKFAMLHRHVFQYLRDPEGNPCSPAD
YSLQQAADGSVYLLPREKSEGNNTATAASNAVSSASGGSLNGHVPTQAPM
HSHQSHGMQAQHVVGGMSQQQQQQSRLPPHLQQQHHLQSQQQQPGGQQQQ
QHRKEASFLDH
BO27754.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:13:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cnc-PO | 1430 | CG43286-PO | 579..1387 | 1..809 | 4287 | 99.5 | Plus |
| cnc-PN | 1133 | CG43286-PN | 329..1133 | 1..805 | 4281 | 99.9 | Plus |
| cnc-PM | 1133 | CG43286-PM | 329..1133 | 1..805 | 4281 | 99.9 | Plus |
| cnc-PL | 1046 | CG43286-PL | 242..1046 | 1..805 | 4281 | 99.9 | Plus |
| cnc-PK | 1383 | CG43286-PK | 579..1383 | 1..805 | 4281 | 99.9 | Plus |
