BO27756.complete Sequence
2884 bp assembled on 2010-09-23
GenBank Submission: KX797802
> BO27756.complete
GAAGTTATCAGTCGACATGTATCCAGTTGGACAACAGTCACAGTGGACCC
CCTCGCCCACTCGGCCTCAGAGTCCCTCTCAGGCGCAGACTAGCTTCGAC
ACGCTCACATCACCACCAGCGCCCGGCTCGTCGGTCAATCCCACCGCCGT
CACCAGCCCAAGTGCCCAGAATGTGGCCGCTGGTGGAGCAACTGTGGCCG
GTGCAGCAGCAACTGCCGCCCAGGTGGCCTCCGCCTTGGGTGCCACCACC
GGCAGCGTGACGCCAGCAATTGCCACCGCAACGCCAGCCACGCAGCCGGA
TATGCCCGTCTTTACGTGTCCACGACGCCCGAATCTCGGACGAGAGGGTC
GCCCGATTGTGCTGCGCGCCAATCACTTCCAGGTGACAATGCCGCGTGGC
TATGTGCATCACTATGACATCAATATACAGCCGGACAAGTGTCCGCGAAA
GGTGAACCGTGAGATTATCGAGACTATGGTGCATGCCTATAGCAAGATCT
TCGGAGTGCTCAAGCCGGTGTTCGATGGTCGCAACAATCTGTATACCCGC
GATCCCCTGCCCATTGGCAACGAGCGTCTAGAGCTGGAGGTTACTCTACC
CGGCGAGGGCAAAGATCGAATCTTTCGCGTGACGATCAAGTGGCAGGCTC
AGGTCTCGCTCTTCAATTTGGAGGAAGCTCTCGAAGGCCGCACGCGGCAG
ATACCCTATGATGCCATTTTGGCGCTCGATGTGGTCATGCGCCATCTGCC
CAGCATGACGTACACGCCAGTGGGACGTAGCTTCTTCAGTTCCCCGGAGG
GTTACTACCATCCCCTGGGTGGTGGACGCGAGGTTTGGTTCGGTTTCCAT
CAGAGCGTAAGGCCCTCGCAGTGGAAGATGATGCTCAATATCGATGTCTC
GGCCACCGCTTTCTACAAGGCTCAACCAGTCATTGACTTCATGTGCGAGG
TGCTGGACATTCGCGACATCAACGAGCAGCGCAAACCGCTCACCGATTCG
CAGCGCGTCAAGTTCACGAAGGAGATCAAGGGTTTGAAGATCGAGATCAC
CCACTGCGGCCAGATGCGTCGCAAGTATCGTGTGTGCAACGTCACTCGCC
GCCCCGCTCAGATGCAATCATTCCCACTGCAGCTGGAGAACGGACAGACC
GTAGAGTGCACCGTGGCCAAGTACTTCCTGGACAAGTACCGCATGAAATT
GCGCTACCCGCACTTGCCCTGCCTGCAGGTTGGCCAAGAGCACAAGCACA
CTTACCTGCCTCTAGAGGTGTGCAACATTGTGGCCGGACAGCGGTGCATT
AAAAAGCTGACCGATATGCAGACGTCGACCATGATCAAGGCCACAGCTCG
TTCAGCTCCGGATCGTGAGCGTGAGATTAACAACTTGGTAAAGCGCGCCG
ACTTCAACAACGATTCGTATGTGCAAGAGTTTGGCCTGACCATCTCCAAT
TCGATGATGGAGGTACGAGGACGCGTCTTGCCTCCTCCCAAGCTTCAGTA
TGGGGGACGTGTGTCTACCGGCCTCACCGGCCAGCAGCTGTTCCCGCCAC
AGAACAAGGTGAGCTTGGCCTCGCCCAACCAGGGTGTATGGGATATGCGA
GGCAAGCAGTTCTTCACTGGCGTCGAGATCCGCATCTGGGCCATCGCCTG
TTTTGCCCCACAGCGCACGGTGCGCGAGGATGCGCTGCGTAATTTCACCC
AGCAGCTGCAGAAGATCTCAAACGATGCAGGCATGCCGATAATTGGACAG
CCGTGCTTCTGTAAGTACGCCACCGGGCCGGATCAAGTGGAACCCATGTT
CCGTTACCTGAAGATCACCTTCCCCGGCCTGCAACTCGTCGTGGTTGTGC
TGCCCGGCAAGACTCCAGTATACGCCGAGGTGAAGCGTGTAGGTGACACC
GTTCTGGGTATGGCCACCCAGTGTGTGCAGGCCAAGAACGTGAACAAGAC
ATCGCCACAGACGCTCTCTAATCTGTGTCTGAAGATCAACGTCAAGTTGG
GCGGCATCAATTCAATTCTGGTCCCCTCCATTCGGCCAAAGGTCTTCAAT
GAGCCGGTCATCTTTTTGGGTGCCGATGTGACACACCCACCAGCTGGCGA
CAACAAGAAACCATCGATTGCCGCCGTCGTGGGCTCCATGGATGCCCATC
CATCGCGGTATGCCGCCACCGTTCGCGTACAGCAGCACCGACAGGAGATC
ATCCAGGAGCTGAGCAGCATGGTGCGCGAGCTGTTGATCATGTTCTACAA
GTCGACGGGCGGCTACAAGCCCCACCGCATCATACTCTATCGTGACGGAG
TCTCCGAGGGACAATTCCCACATGTCCTGCAACACGAATTGACCGCCATT
CGCGAGGCCTGCATTAAGCTAGAGCCAGAGTATCGGCCGGGCATCACATT
CATTGTGGTGCAGAAGCGCCATCACACTCGACTCTTCTGCGCGGAGAAGA
AGGAGCAGAGCGGCAAATCGGGCAATATTCCCGCAGGCACCACCGTCGAT
GTGGGCATCACACATCCCACCGAATTTGATTTCTATCTATGCAGCCATCA
GGGCATCCAGGGCACCAGTCGCCCCTCGCACTACCACGTTCTGTGGGACG
ACAATCACTTTGACTCGGACGAGCTGCAGTGCCTCACGTATCAGCTATGC
CATACGTACGTGCGCTGCACCCGATCCGTCAGTATACCGGCGCCAGCCTA
CTACGCCCATTTAGTGGCCTTCCGTGCCAGATATCATCTGGTGGAGAAGG
AGCACGATTCGGGCGAGGGTTCGCACCAGAGCGGCTGCTCAGAGGATCGT
ACGCCAGGTGCCATGGCCAGGGCCATCACTGTGCACGCGGATACCAAGAA
GGTCATGTACTTTGCCGCAAGCTTTCTAGACCAT
BO27756.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:05:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AGO1-RB | 2853 | CG6671-PB | 1..2850 | 17..2866 | 14250 | 100 | Plus |
| AGO1-RD | 2955 | CG6671-PD | 122..2952 | 36..2866 | 14155 | 100 | Plus |
| AGO1-RA | 2955 | CG6671-PA | 122..2952 | 36..2866 | 14155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:05:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AGO1-RB | 5738 | CG6671-RB | 321..3172 | 15..2866 | 14260 | 100 | Plus |
| AGO1-RD | 7888 | CG6671-RD | 470..3300 | 36..2866 | 14155 | 100 | Plus |
| AGO1-RA | 3481 | CG6671-RA | 213..3043 | 36..2866 | 14155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:05:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13948177..13949787 | 2730..1120 | 8055 | 100 | Minus |
| 2R | 25286936 | 2R | 13950132..13950917 | 896..111 | 3930 | 100 | Minus |
| 2R | 25286936 | 2R | 13949850..13950073 | 1119..896 | 1120 | 100 | Minus |
| 2R | 25286936 | 2R | 13947975..13948113 | 2866..2728 | 695 | 100 | Minus |
| 2R | 25286936 | 2R | 13951614..13951688 | 110..36 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:05:06 has no hits.
BO27756.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-23 15:34:56 Download gff for
BO27756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AGO1-RB | 294..3143 | 17..2868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:20 Download gff for
BO27756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AGO1-RB | 323..3172 | 17..2868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:10:28 Download gff for
BO27756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AGO1-RB | 323..3172 | 17..2868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:10:28 Download gff for
BO27756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13947973..13948110 | 2731..2868 | 98 | <- | Minus |
| 2R | 13948177..13949787 | 1120..2730 | 100 | <- | Minus |
| 2R | 13949850..13950072 | 897..1119 | 100 | <- | Minus |
| 2R | 13950132..13950917 | 111..896 | 100 | <- | Minus |
| 2R | 13951614..13951688 | 36..110 | 100 | <- | Minus |
| 2R | 13953049..13953067 | 17..35 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:20 Download gff for
BO27756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9835478..9835615 | 2731..2868 | 98 | <- | Minus |
| arm_2R | 9835682..9837292 | 1120..2730 | 100 | <- | Minus |
| arm_2R | 9837355..9837577 | 897..1119 | 100 | <- | Minus |
| arm_2R | 9837637..9838422 | 111..896 | 100 | <- | Minus |
| arm_2R | 9839119..9839193 | 36..110 | 100 | <- | Minus |
| arm_2R | 9840554..9840572 | 17..35 | 100 | | Minus |
BO27756.pep Sequence
Translation from 16 to 2884
> BO27756.pep
MYPVGQQSQWTPSPTRPQSPSQAQTSFDTLTSPPAPGSSVNPTAVTSPSA
QNVAAGGATVAGAAATAAQVASALGATTGSVTPAIATATPATQPDMPVFT
CPRRPNLGREGRPIVLRANHFQVTMPRGYVHHYDINIQPDKCPRKVNREI
IETMVHAYSKIFGVLKPVFDGRNNLYTRDPLPIGNERLELEVTLPGEGKD
RIFRVTIKWQAQVSLFNLEEALEGRTRQIPYDAILALDVVMRHLPSMTYT
PVGRSFFSSPEGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFY
KAQPVIDFMCEVLDIRDINEQRKPLTDSQRVKFTKEIKGLKIEITHCGQM
RRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYRMKLRYPHL
PCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDR
EREINNLVKRADFNNDSYVQEFGLTISNSMMEVRGRVLPPPKLQYGGRVS
TGLTGQQLFPPQNKVSLASPNQGVWDMRGKQFFTGVEIRIWAIACFAPQR
TVREDALRNFTQQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKI
TFPGLQLVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTL
SNLCLKINVKLGGINSILVPSIRPKVFNEPVIFLGADVTHPPAGDNKKPS
IAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVRELLIMFYKSTGGY
KPHRIILYRDGVSEGQFPHVLQHELTAIREACIKLEPEYRPGITFIVVQK
RHHTRLFCAEKKEQSGKSGNIPAGTTVDVGITHPTEFDFYLCSHQGIQGT
SRPSHYHVLWDDNHFDSDELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLV
AFRARYHLVEKEHDSGEGSHQSGCSEDRTPGAMARAITVHADTKKVMYFA
ASFLDH
BO27756.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:33:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AGO1-PB | 950 | CG6671-PB | 1..950 | 1..950 | 5027 | 100 | Plus |
| AGO1-PD | 984 | CG6671-PD | 41..984 | 7..950 | 4990 | 99.9 | Plus |
| AGO1-PA | 984 | CG6671-PA | 41..984 | 7..950 | 4990 | 99.9 | Plus |
| AGO1-PC | 984 | CG6671-PC | 41..984 | 7..950 | 4990 | 99.9 | Plus |
| AGO2-PE | 787 | CG7439-PE | 6..756 | 131..908 | 890 | 32.7 | Plus |
