BO27766.complete Sequence
385 bp assembled on 2010-08-18
GenBank Submission: KX799598
> BO27766.complete
GAAGTTATCAGTCGACATGAGCAAGGAAATCCGTTTGGCCACCGTCAACG
AACACAACAAAGCCACGGATCTGTGGGTGGTCATCGACAACAAGGTCTAC
GATGTGACCAAGTTCCGTCTCGAGCATCCCGGTGGCGAGGAATCCCTGGT
GGATGAGGCCGGTCGCGATGCCACCAAGGCCTTCAATGACGTGGGTCACA
GCTCGGAGGCGAGAGAGATGTTGAAGAAATACTACATTGGTGACCTGGCT
GCTGCGGACATCAAGAAGAAAAGCCCAATTAGCTGCCGTCATGTGGCACT
GGCCCTGGGCGCCGCCTTCATCGGCATCTCGCTGGTCTATGTGATCCGAC
GCGGTGTGGCCAGAAACGCAAGCTTTCTAGACCAT
BO27766.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:36:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3566-RB | 354 | CG3566-PB | 1..351 | 17..367 | 1755 | 100 | Plus |
| CG3566-RD | 321 | CG3566-PD | 1..266 | 17..282 | 1330 | 100 | Plus |
| CG3566-RC | 270 | CG3566-PC | 1..266 | 17..282 | 1330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:36:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3566-RB | 550 | CG3566-RB | 86..436 | 17..367 | 1755 | 100 | Plus |
| CG3566-RD | 770 | CG3566-RD | 86..351 | 17..282 | 1330 | 100 | Plus |
| CG3566-RC | 1607 | CG3566-RC | 86..351 | 17..282 | 1330 | 100 | Plus |
| CG3566-RD | 770 | CG3566-RD | 570..656 | 281..367 | 435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:36:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6276532..6276639 | 124..17 | 540 | 100 | Minus |
| X | 23542271 | X | 6276370..6276465 | 213..118 | 465 | 99 | Minus |
| X | 23542271 | X | 6275086..6275172 | 367..281 | 435 | 100 | Minus |
| X | 23542271 | X | 6276228..6276298 | 282..212 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:36:56 has no hits.
BO27766.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:54:49 Download gff for
BO27766.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3566-RB | 40..390 | 17..369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:18:06 Download gff for
BO27766.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3566-RB | 86..436 | 17..369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:15:00 Download gff for
BO27766.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3566-RB | 86..436 | 17..369 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:15:00 Download gff for
BO27766.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6275084..6275170 | 283..369 | 97 | <- | Minus |
| X | 6276228..6276296 | 214..282 | 100 | <- | Minus |
| X | 6276370..6276458 | 125..213 | 100 | <- | Minus |
| X | 6276532..6276639 | 17..124 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:18:06 Download gff for
BO27766.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6169117..6169203 | 283..369 | 97 | <- | Minus |
| arm_X | 6170261..6170329 | 214..282 | 100 | <- | Minus |
| arm_X | 6170403..6170491 | 125..213 | 100 | <- | Minus |
| arm_X | 6170565..6170672 | 17..124 | 100 | | Minus |
BO27766.pep Sequence
Translation from 16 to 385
> BO27766.pep
MSKEIRLATVNEHNKATDLWVVIDNKVYDVTKFRLEHPGGEESLVDEAGR
DATKAFNDVGHSSEAREMLKKYYIGDLAAADIKKKSPISCRHVALALGAA
FIGISLVYVIRRGVARNASFLDH
BO27766.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:10:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3566-PB | 117 | CG3566-PB | 1..117 | 1..117 | 594 | 100 | Plus |
| CG3566-PD | 106 | CG3566-PD | 1..89 | 1..89 | 456 | 100 | Plus |
| CG3566-PC | 89 | CG3566-PC | 1..88 | 1..88 | 452 | 100 | Plus |
| Cyt-b5-PB | 134 | CG2140-PB | 6..85 | 2..81 | 235 | 52.5 | Plus |
| CG6870-PB | 137 | CG6870-PB | 43..116 | 4..77 | 205 | 52.7 | Plus |
