Clone BO27768 Report

Search the DGRC for BO27768

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:277
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG42371-RA
Protein status:BO27768.pep: Imported from assembly
Sequenced Size:295

Clone Sequence Records

BO27768.complete Sequence

295 bp assembled on 2010-09-30

GenBank Submission: KX796220

> BO27768.complete
GAAGTTATCAGTCGACATGCTGCGCAAAACACCAAAACCTGCAATTTGGA
AATTCATCAAAGGAAGTGCCAAAACACTGTTTGTCCTCGAGGCAGTCTGC
TTCGCAGCCAGCTACGGCGTTTATTATCGCATGAACACGAATCGAGAGTT
TCGTCAGCATATTCACGAGAACTATCCCTTCGTTTTGGACTATTACTACA
AAATTGGTGAAATCGTCGGAGACAGCACAGTGCGACAGGCGGATGCGAGT
TATTGGAGTGCTTTGAAGAAAAGCGACGCAAGCTTTCTAGACCAT

BO27768.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:15:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG42371-RA 264 CG42371-PA 1..261 17..277 1305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:15:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG42371-RA 691 CG42371-RA 105..365 17..277 1305 100 Plus
CG15386-RA 691 CG15386-RA 105..365 17..277 1305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:15:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2216829..2216961 277..145 665 100 Minus
2L 23513712 2L 2217013..2217142 146..17 650 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:15:18 has no hits.

BO27768.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-30 16:20:30 Download gff for BO27768.complete
Subject Subject Range Query Range Percent Splice Strand
CG42371-RA 90..350 17..279 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:40 Download gff for BO27768.complete
Subject Subject Range Query Range Percent Splice Strand
CG15386-RA 105..365 17..279 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:14:07 Download gff for BO27768.complete
Subject Subject Range Query Range Percent Splice Strand
CG15386-RA 105..365 17..279 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:14:07 Download gff for BO27768.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2217013..2217142 17..146 100   Minus
2L 2216827..2216959 147..279 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:40 Download gff for BO27768.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2216827..2216959 147..279 98 <- Minus
arm_2L 2217013..2217142 17..146 100   Minus

BO27768.pep Sequence

Translation from 16 to 295

> BO27768.pep
MLRKTPKPAIWKFIKGSAKTLFVLEAVCFAASYGVYYRMNTNREFRQHIH
ENYPFVLDYYYKIGEIVGDSTVRQADASYWSALKKSDASFLDH

BO27768.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:34:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG42371-PA 87 CG42371-PA 1..87 1..87 465 100 Plus