Clone BO27776 Report

Search the DGRC for BO27776

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:277
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG6902-RA
Protein status:BO27776.pep: Imported from assembly
Sequenced Size:334

Clone Sequence Records

BO27776.complete Sequence

334 bp assembled on 2010-08-18

GenBank Submission: KX796469

> BO27776.complete
GAAGTTATCAGTCGACATGACGAATTATGAGAACATTATAAATTTGCCAT
TAAACTTTAATGCAAATAATCACGCCGCTGGTAATAATGAGAACAATGCC
AAAATTGCCATCGTTGGCGAGCAGCTGCTGAATAAGATGTCGCAGCGGGA
TTTCTCCGAAAGCGGCGCTCCCTACCGCCGAAGAACTTCTTCGTTGGCCA
TTTGGAGGGCATGTTCCTGCTCTCTGTGCGTGTTATTTGACTTTGACCAT
TGGCAGCAGAAACGCCATATCATGTCTGCGAGATCTACTCGGCTAGCACC
GCCAACGCTCGGAAGAGCAAGCTTTCTAGACCAT

BO27776.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:38:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG43163-RC 7572 CG43163-PC 1..145 17..161 725 100 Plus
CG43163-RD 7572 CG43163-PD 1..145 17..161 725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:38:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG43163-RC 7878 CG43163-RC 107..251 17..161 725 100 Plus
CG43163-RD 7970 CG43163-RD 199..343 17..161 725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8491308..8491463 316..161 780 100 Minus
3L 28110227 3L 8494119..8494262 160..17 720 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:38:17 has no hits.

BO27776.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:55:07 Download gff for BO27776.complete
Subject Subject Range Query Range Percent Splice Strand
CG6902-RA 50..349 17..318 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:18:39 Download gff for BO27776.complete
Subject Subject Range Query Range Percent Splice Strand
CG43163-RD 199..343 17..161 100 == Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:15:31 Download gff for BO27776.complete
Subject Subject Range Query Range Percent Splice Strand
CG43163-RD 199..343 17..161 100 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:15:31 Download gff for BO27776.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8491305..8491463 161..318 98 <- Minus
3L 8494119..8494262 17..160 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:18:39 Download gff for BO27776.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8484405..8484563 161..318 98 <- Minus
arm_3L 8487219..8487362 17..160 100   Minus

BO27776.pep Sequence

Translation from 16 to 334

> BO27776.pep
MTNYENIINLPLNFNANNHAAGNNENNAKIAIVGEQLLNKMSQRDFSESG
APYRRRTSSLAIWRACSCSLCVLFDFDHWQQKRHIMSARSTRLAPPTLGR
ASFLDH

BO27776.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:12:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG43163-PC 2523 CG43163-PC 1..49 1..49 249 98 Plus
CG43163-PD 2523 CG43163-PD 1..49 1..49 249 98 Plus