BO27778.complete Sequence
523 bp assembled on 2010-08-18
GenBank Submission: KX797038
> BO27778.complete
GAAGTTATCAGTCGACATGGTTTACGAAAGTGGATTTACGACCCGCAGAA
CCTACTCCTCGAGGCCGGTGACAACTTCCTACGCAGTTACGAGAACGAAG
AGAACACCAATTGACTGGGAGAAAGTTCCGTTCGTGCCGCGGCCGTCGCT
CATCTCGGATCCGGTGACCGCCTTCGGAGTGCGGCGTCCCGATCTCGAGC
GGCGCCAGCGGTCGATCCTCGATCCGATCAATCGGGCCTCCATCAAGCCC
GACTACAAGCTGGCCTACGAGCCCATTGAGCCGTATGTCTCCACCCGGGA
CAAGAACCGGACGCGGATCCTGGGCATGGTGCGCCAGCACATCGACACCG
TGGAGGCGGGTGGCAATACCGCCGGCCGCACCTTCCGCGACAGTCTGGAC
GCCCAGCTGCCGCGACTCCATCGCGCCGTCTCCGAGTCCTTGCCAGTTCG
CCGGGAGACCTACCGCAACGAGAGGTCGGGCGCGATGGTCACCAAGTACT
CCTACGCAAGCTTTCTAGACCAT
BO27778.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:38:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45078-RA | 492 | CG45078-PA | 1..489 | 17..505 | 2445 | 100 | Plus |
| fau-RA | 396 | CG45077-PA | 1..76 | 17..92 | 380 | 100 | Plus |
| CG45076-RI | 1032 | CG45076-PI | 1..75 | 17..91 | 375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:38:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45078-RA | 1925 | CG45078-RA | 122..612 | 15..505 | 2455 | 100 | Plus |
| fau-RA | 1020 | CG45077-RA | 122..199 | 15..92 | 390 | 100 | Plus |
| CG45076-RI | 2109 | CG45076-RI | 122..198 | 15..91 | 385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:38:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10774652..10775066 | 505..91 | 2075 | 100 | Minus |
| 3R | 32079331 | 3R | 10777177..10777253 | 91..15 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:38:24 has no hits.
BO27778.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-18 15:55:09 Download gff for
BO27778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fau-RB | 111..599 | 17..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:18:40 Download gff for
BO27778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fau-RB | 124..612 | 17..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:15:33 Download gff for
BO27778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45078-RA | 124..612 | 17..507 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:15:33 Download gff for
BO27778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10774650..10775065 | 92..507 | 99 | <- | Minus |
| 3R | 10777177..10777251 | 17..91 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:18:40 Download gff for
BO27778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6600372..6600787 | 92..507 | 99 | <- | Minus |
| arm_3R | 6602899..6602973 | 17..91 | 100 | | Minus |
BO27778.pep Sequence
Translation from 16 to 523
> BO27778.pep
MVYESGFTTRRTYSSRPVTTSYAVTRTKRTPIDWEKVPFVPRPSLISDPV
TAFGVRRPDLERRQRSILDPINRASIKPDYKLAYEPIEPYVSTRDKNRTR
ILGMVRQHIDTVEAGGNTAGRTFRDSLDAQLPRLHRAVSESLPVRRETYR
NERSGAMVTKYSYASFLDH
BO27778.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:12:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45078-PA | 163 | CG45078-PA | 1..163 | 1..163 | 842 | 100 | Plus |
