Clone BO27781 Report

Search the DGRC for BO27781

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:277
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptCG1620-RA
Protein status:BO27781.pep: Imported from assembly
Sequenced Size:1792

Clone Sequence Records

BO27781.complete Sequence

1792 bp assembled on 2010-09-23

GenBank Submission: KX799912

> BO27781.complete
GAAGTTATCAGTCGACATGATGGAGTTCGGGAAATCGTCGGATCACTCCC
AGCACAGCGCTTCCGAGGCGTCGGCGGACTCCGGCAGCCTGGCAAACAGC
GATCTGGCCGTCACGCCCACCAAGCGGGAGCGCCGCAAGTCGCCGGCCAC
CAGTTCGGACAACAACAGCACCAGCGTCCAACCGCCAATGTCGCCGTCGT
CCTCGGTGGCGGACACCACCTTTGAGCCCACCATCGACATGATGGTCAAC
GACTTTGACGACGAGGCCACGCTGAACGAGGAGGAGGCTCTGGCGGACAT
GGAGGCGCACAGTGCCGAGGACGAGATCGCCACGCTGCGCGAGGAGAGCG
AGATGCCCATCGAGGAGCTGCTGGCCAAATATGGCGGGACAGCGGCTTCG
CCGGCTATGAGCAGCTCGAACCGTTCCGGCAGCAGTTCACGACGTGCACG
TAGGGCCACAAAGCGCCAGTACCAGGAACTGGACACGGAGATGGCTCACA
CGTCGACCTCCACTTCGAGCAGCACATCGCAACTGGAGAAACACGACGGC
ATAGACCAGGAGGAGGAACCCAAGGAGGAGGCCGATAAGCTAGCATCACC
CCCAGAATCAGGAGAAGCTTCGTCCGTGGACACGGAGGATGCGCAAAAGT
ATGAGGGGATCAAGAAGCAGCATCGCTCACATTTGCTGGACCTGTATCCA
GATGAATCCTTCGTCGATCTGGCGCCCACATGCGGAGAGGAGACGGAAAG
ATTCACTCCACTGCAAACACTGTTCGATGAAGTGGAGGCCGAGGAGGAGG
AGGAAAGCGAATCCGAGTTGGACGATGCTCGGAAGATAATAATGGTGGGT
CACGACTATCAGGCTGAGATCCCAGAGGGGCTGTCGCAATATGGCGATAT
ATTGCCATATGAGAACGAGGATCAGTTGATCTGGGAGCCCAGCCAAGTCA
GCGAGCGCGAGGTGGAGGAATATCTGGCCAAGATACAGGAAACCCGATCG
ATAGTTCCGCCGGATGACGGGTCAGAGACTACGGCGGGCGAGGAAGGCGC
AGCTACAGGTGCTACTATCGAACCGCCGGCTCCCATTACAGCTCCAGCCA
CGCCTCCGAGGGCTCCGCTTGCGACAAGTGGCGCTGGCGATCAGGAGCTG
GTGGTAAAGGATAATGAGCAGGCGCTCCATCTGCTTGTCCAGTGCGGTTA
CGACTTCAAAGAAGCCCTACGACGCAAGCGCATGAACGTCCTGCCTCTCA
CTGATACCATGAGCAGCTGGTCCGAGGACGAGTGCCTAAAGTTCGAGGAG
GGCATTCAGCGGTTTGGCAAGGACTTCTATCAGATACGTCAAAACCAGGT
GCGCACTAGAACCATGCGCGAGCTGGTCCATTTCTACTATCTGTGGAAGA
AGAGTGAGCGCCGGGATCAGAGCTTTGCTTTAAACGACACCATCGATCAC
ATGGATGTTTTCATCAACGAGGCGGGCGGTGGCAACGGAAGTGGTAATGG
AAATGGTGCCGGGATCGTATCGGGCACCGCTAACAGTAATGGTAGCTGCT
CACCGCATAGCAGCAATGGTCACAGCAATGGGGATTTGTCTGCCCTGGAG
AAGGATACCATCGCCAGTCCTCGAAAACCCGCCTCTAAGAGCTATTCTAT
TATGACCGGGAGTCAGGCGGTAGGTAATCCTTCCGGGGGGAACCGAAAGC
GATGCTCATCCGCATCTCTGCCCCTGGAGGACGAGGACAACAACGTCGAG
GAAGAACCCAGCCTGTCCACAGTGGCAAGCTTTCTAGACCAT

BO27781.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:06:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG1620-RC 1761 CG1620-PC 1..1758 17..1774 8775 99.9 Plus
CG1620-RA 1761 CG1620-PA 1..1758 17..1774 8775 99.9 Plus
CG1620-RB 1374 CG1620-PB 1..1334 17..1350 6655 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG1620-RC 2204 CG1620-RC 87..1844 17..1774 8775 99.9 Plus
CG1620-RA 2529 CG1620-RA 206..1963 17..1774 8775 99.9 Plus
CG1620-RB 2272 CG1620-RB 87..1420 17..1350 6655 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7495526..7496261 752..17 3665 99.9 Minus
2R 25286936 2R 7494864..7495461 1350..753 2990 100 Minus
2R 25286936 2R 7494372..7494800 1774..1346 2145 100 Minus
Blast to na_te.dros performed on 2014-11-28 08:06:46 has no hits.

BO27781.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-23 16:02:54 Download gff for BO27781.complete
Subject Subject Range Query Range Percent Splice Strand
CG1620-RA 206..1963 17..1776 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:36 Download gff for BO27781.complete
Subject Subject Range Query Range Percent Splice Strand
CG1620-RA 206..1963 17..1776 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:11:11 Download gff for BO27781.complete
Subject Subject Range Query Range Percent Splice Strand
CG1620-RA 206..1963 17..1776 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:11:11 Download gff for BO27781.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7494370..7494797 1349..1776 99 <- Minus
2R 7494866..7495461 753..1348 100 <- Minus
2R 7495526..7496261 17..752 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:36 Download gff for BO27781.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3381875..3382302 1349..1776 99 <- Minus
arm_2R 3382371..3382966 753..1348 100 <- Minus
arm_2R 3383031..3383766 17..752 99   Minus

BO27781.pep Sequence

Translation from 16 to 1792

> BO27781.pep
MMEFGKSSDHSQHSASEASADSGSLANSDLAVTPTKRERRKSPATSSDNN
STSVQPPMSPSSSVADTTFEPTIDMMVNDFDDEATLNEEEALADMEAHSA
EDEIATLREESEMPIEELLAKYGGTAASPAMSSSNRSGSSSRRARRATKR
QYQELDTEMAHTSTSTSSSTSQLEKHDGIDQEEEPKEEADKLASPPESGE
ASSVDTEDAQKYEGIKKQHRSHLLDLYPDESFVDLAPTCGEETERFTPLQ
TLFDEVEAEEEEESESELDDARKIIMVGHDYQAEIPEGLSQYGDILPYEN
EDQLIWEPSQVSEREVEEYLAKIQETRSIVPPDDGSETTAGEEGAATGAT
IEPPAPITAPATPPRAPLATSGAGDQELVVKDNEQALHLLVQCGYDFKEA
LRRKRMNVLPLTDTMSSWSEDECLKFEEGIQRFGKDFYQIRQNQVRTRTM
RELVHFYYLWKKSERRDQSFALNDTIDHMDVFINEAGGGNGSGNGNGAGI
VSGTANSNGSCSPHSSNGHSNGDLSALEKDTIASPRKPASKSYSIMTGSQ
AVGNPSGGNRKRCSSASLPLEDEDNNVEEEPSLSTVASFLDH

BO27781.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG1620-PC 586 CG1620-PC 1..586 1..586 3010 100 Plus
CG1620-PA 586 CG1620-PA 1..586 1..586 3010 100 Plus
CG1620-PB 457 CG1620-PB 1..450 1..450 2278 99.1 Plus
MTA1-like-PB 844 CG2244-PB 196..481 275..567 203 23.1 Plus
MTA1-like-PC 853 CG2244-PC 205..490 275..567 203 23.1 Plus