BO27782.complete Sequence
892 bp assembled on 2010-09-23
> BO27782.complete
GAAGTTATCAGTCGACATGAACCTCGAGCAGCAGGGGATGGATCCGCAAG
GGGTGGAAAACCAGCAGGAAATCGTCCAGGCAGCCGAAGGAGAACAGCAG
TTGCAAAGTTGCTGTAAGGTCTTCAAAATGAAGGGATCGACGCTGGACAA
AATCTCCGCCTTCCTCGGCGAGCTCATCGGCACCGGCATCCTGGTCTTCC
TGGGCTGCATGGGTTGCGTGAAGACGGACCTCTTTCCCAACAACCATCTG
CAGATTGTGCTGAACTTCGGCTTCGCCGTCCTCATCGCCATCCAGTGCTT
TGGCTGCGTCTCCGGTGCCCATCTGAATCCCGCCGTGACCGTGGCCGCCT
ACATCTACGAGATGGTCACCCTGCGCATGGCATTTGCCTACTTCGCCGCC
CAGATGCTGGGCGCCTTCATCGGCTACGGCCTGCTCATGGTCCTGCTTCC
CTCGCCCACACTTACGGTGGGCGCTGGGCTCTGCGTGACCTTGCCCCACA
CCAGCGTAACCACGGGCCAGGCCCTCGGCATCGAGTTCGTAATCACCTCC
ATCCTGGTCATCGTCTGCTGCGGAGTGTGGGATCCGCGCAACTCCAAGTT
CCATGACTCCGTGGGCATTCGATTTGGCCTGGCCATCGCCTGTCTCGCCT
GCGCTGCCGGTCCCTTCACCGGCGGCAGCATGAACCCGGCCAGGTCGTTC
GCCCCCGCCCTGTGGAACAAGCACTTCGAGAGCAACTGGATCTACTGGCT
GGCCCCGCTGAGCTCCTCCGCCATCACCGCCTACGCCTACAAGGTCGTCT
TCCGCCGCGAGGTGGTTGAGGCGGAGATCACCTCCAATGAGAAGCTGCGG
CAACTGGAGGACGTCCAGCTGTCGGCAAGCTTTCTAGACCAT
BO27782.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:07:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4019-RE | 861 | CG4019-PE | 1..858 | 17..874 | 4290 | 100 | Plus |
| CG4019-RF | 894 | CG4019-PF | 124..891 | 107..874 | 3840 | 100 | Plus |
| CG4019-RC | 786 | CG4019-PC | 17..783 | 108..874 | 3835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:07:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4019-RE | 1183 | CG4019-RE | 82..939 | 17..874 | 4290 | 100 | Plus |
| CG4019-RF | 1271 | CG4019-RF | 260..1027 | 107..874 | 3840 | 100 | Plus |
| CG4019-RD | 1128 | CG4019-RD | 117..884 | 107..874 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:07:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23608131..23608683 | 659..107 | 2765 | 100 | Minus |
| 2R | 25286936 | 2R | 23607836..23608051 | 874..659 | 1080 | 100 | Minus |
| 2R | 25286936 | 2R | 23608931..23609022 | 108..17 | 460 | 100 | Minus |
| 2R | 25286936 | 2R | 23604625..23604800 | 435..260 | 400 | 81.8 | Minus |
| 2R | 25286936 | 2R | 23606358..23606443 | 350..265 | 205 | 82.6 | Minus |
Blast to na_te.dros performed 2014-11-28 08:07:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| diver2 | 4917 | diver2 DIVER2 4917bp | 4100..4150 | 882..830 | 116 | 71.7 | Minus |
BO27782.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-23 16:02:55 Download gff for
BO27782.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4019-RD | 78..845 | 107..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:40 Download gff for
BO27782.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4019-RE | 82..939 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:11:18 Download gff for
BO27782.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4019-RE | 82..939 | 17..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:11:18 Download gff for
BO27782.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23608931..23609022 | 17..108 | 100 | | Minus |
| 2R | 23607834..23608051 | 659..876 | 99 | <- | Minus |
| 2R | 23608132..23608681 | 109..658 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:40 Download gff for
BO27782.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19495357..19495574 | 659..876 | 99 | <- | Minus |
| arm_2R | 19495655..19496204 | 109..658 | 100 | <- | Minus |
| arm_2R | 19496454..19496545 | 17..108 | 100 | | Minus |
BO27782.pep Sequence
Translation from 16 to 892
> BO27782.pep
MNLEQQGMDPQGVENQQEIVQAAEGEQQLQSCCKVFKMKGSTLDKISAFL
GELIGTGILVFLGCMGCVKTDLFPNNHLQIVLNFGFAVLIAIQCFGCVSG
AHLNPAVTVAAYIYEMVTLRMAFAYFAAQMLGAFIGYGLLMVLLPSPTLT
VGAGLCVTLPHTSVTTGQALGIEFVITSILVIVCCGVWDPRNSKFHDSVG
IRFGLAIACLACAAGPFTGGSMNPARSFAPALWNKHFESNWIYWLAPLSS
SAITAYAYKVVFRREVVEAEITSNEKLRQLEDVQLSASFLDH
BO27782.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:33:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4019-PE | 286 | CG4019-PE | 1..286 | 1..286 | 1488 | 100 | Plus |
| CG4019-PF | 297 | CG4019-PF | 42..297 | 31..286 | 1337 | 100 | Plus |
| CG4019-PC | 261 | CG4019-PC | 7..261 | 32..286 | 1333 | 100 | Plus |
| CG4019-PB | 249 | CG4019-PB | 1..249 | 38..286 | 1295 | 100 | Plus |
| CG4019-PD | 249 | CG4019-PD | 1..249 | 38..286 | 1295 | 100 | Plus |
