BO27787.complete Sequence
1777 bp assembled on 2010-09-13
GenBank Submission: KX799870
> BO27787.complete
GAAGTTATCAGTCGACATGGCGGTCTTGTTTTTATCGTCACATGGCGCCT
CCAGGCATTGGCGGTTGCGGAGGCCGAGTCGCTGGGCGTACAACAGGATG
GCGATATTCAGCAGCACAACGACGGTGGATACCACGACCAGAAAGCGCTC
GACTAATAAGAACCACGTCTCTGTTGTGGGCGCTCTAGTTTCCACTACGA
AGTCATCGCACTACGAGCACCCTTCCTCGCCCTCGGCACTAACTTTTGAG
GCCCTAGAAGAGATGGGAATCGGAATGCTTGATTCCGAAGAAAGCAGCTC
CTCAGCCCTCTCGGCCATCGCTTTGGCGGTTAGCGCCACCAGCGACGACA
ACTCAAATGAGACGACCCCGTGCGCCAGTGTGTCGCGCATGGCGCACCAG
CTACAGCACACGCAACGGCTAAGTCTGGGCTCTACGGGGGACATCACACT
GGATAGCCCAGCTGTGGAGGATTCACTGTCGATGTCCCGTCAATCGGCCG
AGAAGCTGCAGATTCTGGCGCAGGCTAAGCGCTCGTCGTTGGGTTCTGAA
GGTAGCGGCAATTCAAACTCGCCCAGCAAACGTTTGCGCAACCCCCTGGC
TGCAGTCACCTGTAACAACCAGATTGATGGGACTGCTTCGCTCAATTTTC
AGCCATCAACCAGCAGGTTGGCGCAAGTTCGCCAGGCAAAAAAGCCCTCG
ACAACAAATATTACAACCCGAATAGTGGCAGCGGACAGTTTCTTTGTGTT
TCGCACCCCGGCCATGAGTGCCCACATCAACAGCGGCATAAACTACTTTG
AAAGACTTTCAGACGAAATACTACTTGACATCTTTAAGTGGCTCCCGAAG
AAGACGCTGCTGCGCATGGCTACCGTTTGTCGACGCTTTAACCGCTGCTC
TCGCGATGAGACTTTGTGGACAAGGCTAGATTTGGGTTTGCGGACAATTA
GACCAGGTGCCCTCGAGCAAATTGTACGGCGGGGAGTCCTTGTAATACGT
CTGGCCCAGACTAGTATCCAGGAGCCCGCATTTGCACCATATACAGAAGT
GTTTAGGACCCGATTACAATATCTTGACCTGAGTATGGCTTCCATCACCC
GAAGCTCACTGCTGACACTATTGTCCCACTGCCGCCAGCTAAAGAAAATA
AGCTTAGAGAATATTGAGCTCGATGATGACATCTGTGCAGAGATCGCAAA
GAATGAAGCTTTGGAGGCGGTCAATCTGACTATGGCTAGTGGCCTGACGT
CCAACAGTGTTCGCCTGATGATGGAGTCACTTACCAGCCTAAGCAGCTTA
AACATATCGTGGACTGACCTAAGTGCGGATGCTGTTACGGCGTTGGTTAC
CCACATTTCCCCCAACTTAATTCGGCTCAATATCGCTGGCTGCCGCCGCG
TTTTGTTTGACTCGCATGTTGCAACCCTGCAAAAACGGTGTCCTCAGTTG
TTGGAGCTTGATCTATCTGATTGCAATAGTCTAACACCAACAGTCATTAC
TGCAATTATGAAGTTCAAGATGCTGGAATATTTGTCCGTCTCCCGATGCT
ATCTTATTCCAGCAACCAAATTTATTGAACTTAAGAGTATGCCCTCGCTA
ACCTATTTAGACATATTTGGGATGCTGTCGGACACTGCAATGGAAGTCCT
TGAGAAACAACTGCCAAAAATGGGTATAAACAAATTCATTCACAGTTCGG
TATCCCGCCCGACTGTTGGCACGCGACGCACCTCCATTTGGGGTCTGCGC
ACGCGCGACGCAAGCTTTCTAGACCAT
BO27787.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:22:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Skp2-RE | 1680 | CG9772-PE | 54..1677 | 136..1759 | 8120 | 100 | Plus |
| Skp2-RA | 1680 | CG9772-PA | 54..1677 | 136..1759 | 8120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:22:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Skp2-RE | 1853 | CG9772-RE | 122..1745 | 136..1759 | 8120 | 100 | Plus |
| Skp2-RA | 2412 | CG9772-RA | 122..1745 | 136..1759 | 8120 | 100 | Plus |
| CG1103-RB | 1223 | CG1103-RB | 676..800 | 141..17 | 625 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:22:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4336469..4337345 | 1015..139 | 4385 | 100 | Minus |
| 3R | 32079331 | 3R | 4336009..4336408 | 1415..1016 | 2000 | 100 | Minus |
| 3R | 32079331 | 3R | 4335546..4335729 | 1759..1576 | 920 | 100 | Minus |
| 3R | 32079331 | 3R | 4335786..4335945 | 1575..1416 | 800 | 100 | Minus |
| 3R | 32079331 | 3R | 4339367..4339491 | 141..17 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 05:22:16 has no hits.
BO27787.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-16 10:43:57 Download gff for
BO27787.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9772-RB | 75..1817 | 17..1761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:12 Download gff for
BO27787.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skp2-RB | 75..1817 | 17..1761 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:09:43 Download gff for
BO27787.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Skp2-RA | 122..1745 | 136..1761 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:09:43 Download gff for
BO27787.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4335786..4335945 | 1416..1575 | 100 | <- | Minus |
| 3R | 4336009..4336408 | 1016..1415 | 100 | <- | Minus |
| 3R | 4335544..4335729 | 1576..1761 | 98 | <- | Minus |
| 3R | 4336469..4337342 | 142..1015 | 100 | <- | Minus |
| 3R | 4339367..4339491 | 17..141 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:12 Download gff for
BO27787.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 161266..161451 | 1576..1761 | 98 | <- | Minus |
| arm_3R | 161508..161667 | 1416..1575 | 100 | <- | Minus |
| arm_3R | 161731..162130 | 1016..1415 | 100 | <- | Minus |
| arm_3R | 162191..163064 | 142..1015 | 100 | <- | Minus |
| arm_3R | 165089..165213 | 17..141 | 100 | | Minus |
BO27787.pep Sequence
Translation from 16 to 1777
> BO27787.pep
MAVLFLSSHGASRHWRLRRPSRWAYNRMAIFSSTTTVDTTTRKRSTNKNH
VSVVGALVSTTKSSHYEHPSSPSALTFEALEEMGIGMLDSEESSSSALSA
IALAVSATSDDNSNETTPCASVSRMAHQLQHTQRLSLGSTGDITLDSPAV
EDSLSMSRQSAEKLQILAQAKRSSLGSEGSGNSNSPSKRLRNPLAAVTCN
NQIDGTASLNFQPSTSRLAQVRQAKKPSTTNITTRIVAADSFFVFRTPAM
SAHINSGINYFERLSDEILLDIFKWLPKKTLLRMATVCRRFNRCSRDETL
WTRLDLGLRTIRPGALEQIVRRGVLVIRLAQTSIQEPAFAPYTEVFRTRL
QYLDLSMASITRSSLLTLLSHCRQLKKISLENIELDDDICAEIAKNEALE
AVNLTMASGLTSNSVRLMMESLTSLSSLNISWTDLSADAVTALVTHISPN
LIRLNIAGCRRVLFDSHVATLQKRCPQLLELDLSDCNSLTPTVITAIMKF
KMLEYLSVSRCYLIPATKFIELKSMPSLTYLDIFGMLSDTAMEVLEKQLP
KMGINKFIHSSVSRPTVGTRRTSIWGLRTRDASFLDH
BO27787.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:29:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Skp2-PE | 559 | CG9772-PE | 19..559 | 41..581 | 2693 | 100 | Plus |
| Skp2-PA | 559 | CG9772-PA | 19..559 | 41..581 | 2693 | 100 | Plus |
