BO27789.complete Sequence
2425 bp assembled on 2010-10-15
GenBank Submission: KX794579
> BO27789.complete
GAAGTTATCAGTCGACATGGAGGCAGAACAACAAGAATTCGCTGTGAAAC
AATTCATTGATCTCTGCAACAATCTAGGTGCTAACTGCAGCACGACGACA
GCCACATCCCCGTCAACTTCCTCCTCCTCAGCCAGCAGCACGCAGAACTT
AATAGCAGTAGTGCCGCCACAGTTGCAGCAGCTGCAGGTGCAATTACCGG
CGCCAGGTGGAGGAGGAGGAGCAGGTGCAGGAGGAGGAGGTGGTGGAGGT
GGGGGAGCTGCGCCTGTGAGGCGCCACATCTCGCATACGACAGCCGTGAA
GTTTTTGTACGCCCGTAAATTTGATATACCACGAGCAGTCTCACTGTACG
AACAGCATGAACAGATCCGCCTGAAGGAGTATCTATATAACATCGATCCG
GATGTGGAGCCCTTGCGCTCCGAGTTGCAGACCGGCAAGTTCACAATCCT
GCCCGCACGCACTTCCAGTGGCGCTGCCATCGCCCTTTTCACCGCCAATC
GACACAGTCCGCTGAGCGTTTCGCACACAACCACGCTGCAGGGCATCGTC
TATCAGCTGGACAGTGCGCTCCAGGATTCGGAGACGCAGCGTGCCGGGCT
CGTTTTTATCTACGACATGAGCGGCTCCAAGTATTCCAACTTCGACTACG
ACCTCTCCCAGAAGATTCTCACACTGCTTAAGGGCGGCTATCCAGCGCGT
CTGAAGAAGGTCCTGATCGTGACGGCGCCACTGTGGTTCAAGGCACCCTT
CAAGATCCTGCGTCTGTTCGTGCGCGAGAAGCTGCGCGAGCGAGTGTTCA
CTGTATCGGTGCCTCAATTGGCGCTGCACGTGCCGCGCAAGGCGCTGCCC
ATTCACTTGGGTGGCACGCTGGAGGTCGATCACGCCACATGGTTGCTCAG
CTGCCGCCAATCGATGACGAATCGTGAGGACGAGCTGCTGGCCAATATCG
TGGGTGTGGGCGGTGGATCCGGATCCGGTTCAGCAGCTGGATCAGCAGCA
ATTGTGTCCACCAATGGCACGGAAACCGAGGCCGCGACAACGGCAGCCAC
GATAATCAGCGCCGTCCACCAGTTGGGCGATAATAATACCACCGTGGTGA
CGGTCAGCAATGGCGTCGGTCCAGCTGGATCGGCATCTGGCGGAGCAACG
ACAGCAGCGTCGGCGGCGACGGAACCCAACGAAAATATCACAATCAACGG
ACTGAGTCCAAGCCACCGTCAGGCGGCGAATAACAGCAGTAGCAGTAGCA
GCAGTGCAGCCACAGTGGCCAATCCCCTCAAGCTCAACACAAGTGGCTCC
GCGGACAACAATAGTACCATCACGAACGCCACCACAGCTGCTGGAGCAGC
CGGAGCAGCTGCTGGCACCACCACCAATGGCGGCGGCGAGTTCTGGTCAG
AGAATCCACCCAGCAGCGCCTCATCCGGCTTCAGTGACGATGATAGTCTC
GCCGGTCAAGAGGGCGATCCCAAGCCCATTGATCAGATTGTTCAGATGGT
TAAGCAGCGCGGACGCCATGGTCTGATTAAGGAGTACGCGGACATTCGGA
ATAGGGCGCCCGAGGGCACCTTTCTGCATGCGAGAATGCGGGCCAATCTG
ACCAAGAATCGCTACACAGACGTCCTCTGCTACGATCACAGTCGAGTTGT
TCTGGCACACGAAGACGGCGACGAGCCGTCGGATTATATTAATGCGAATT
TCGTCGATGGCTACAAACAAAAGAATGCCTATATTTCAACTCAAGGTCCA
TTACCAAAGACATCCCAGGACTTTTGGCGCATGATCTGGGAACAACATTG
TTTAGTTATAGTGATGACGACGCGCGTGATGGAGCGCGGACGCGTGAAAT
GCGGCCAGTACTGGGAGCCGACTGAAGAAAGTTCCTTAGAGTTTGGCGAC
TACCATGTGCGAACAATTAGCGTTGAGTGCAACGAGGACTATATGGTTGC
CTCGTTAGAATTGAGAAACATAAAGACTGACGAAATTCGCAATGTCTCAC
ATTGGCAGTTCACCAGCTGGCCGGACTATGGCGTTCCCAGCTCGGCCATG
GCCATGCTGAACTTCCTGCAGAAGGTGCGTGAGAAGCAGGCGCAGCTTGT
CCAAGGACTGGGCGACACCTGGGCGGGTCATCCCCGTGGACCGCCCATTG
TGGTGCACTGCAGTGCAGGCATTGGACGCACAGGTACATTCATCACCCTG
GACATTTGCATATCGCGCCTGGAGGACGTGGGCACGGCGGACATACGTGG
AACGGTTGAGAAGATCCGGTCGCAGCGAGCCTACTCCATTCAGATGCCCG
ATCAGTACGTGTTCTGTCACCTGGCCCTCATCGAATACGCATATTCGCGT
GGAATGCTACAGACGGTCGATCTGGCTGGCTTCGATGAGCGCGAACCGGA
CTCGGAGGCAAGCTTTCTAGACCAT
BO27789.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:01:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0232-RC | 2394 | CG32697-PC | 1..2391 | 17..2407 | 11955 | 100 | Plus |
l(1)G0232-RG | 2373 | CG32697-PG | 4..2370 | 41..2407 | 11835 | 100 | Plus |
l(1)G0232-RA | 2484 | CG32697-PA | 115..2481 | 41..2407 | 11835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:01:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0232-RC | 3053 | CG32697-RC | 276..2666 | 17..2407 | 11955 | 100 | Plus |
l(1)G0232-RG | 5668 | CG32697-RG | 488..2854 | 41..2407 | 11835 | 100 | Plus |
l(1)G0232-RF | 5646 | CG32697-RF | 466..2832 | 41..2407 | 11835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:01:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9630194..9631097 | 1584..681 | 4520 | 100 | Minus |
X | 23542271 | X | 9643957..9644367 | 451..41 | 2055 | 100 | Minus |
X | 23542271 | X | 9643656..9643888 | 683..451 | 1165 | 100 | Minus |
X | 23542271 | X | 9629668..9629899 | 1975..1744 | 1160 | 100 | Minus |
X | 23542271 | X | 9629109..9629336 | 2407..2180 | 1140 | 100 | Minus |
X | 23542271 | X | 9629394..9629605 | 2185..1974 | 1060 | 100 | Minus |
X | 23542271 | X | 9629961..9630125 | 1747..1583 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:01:08 has no hits.
BO27789.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-15 09:22:58 Download gff for
BO27789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0232-RC | 45..2435 | 17..2409 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:28:11 Download gff for
BO27789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0232-RC | 276..2666 | 17..2409 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:48 Download gff for
BO27789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0232-RC | 276..2666 | 17..2409 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:48 Download gff for
BO27789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9629668..9629897 | 1746..1975 | 100 | <- | Minus |
X | 9629963..9630123 | 1585..1745 | 100 | <- | Minus |
X | 9629107..9629332 | 2184..2409 | 99 | <- | Minus |
X | 9629396..9629603 | 1976..2183 | 100 | <- | Minus |
X | 9630194..9631095 | 683..1584 | 100 | <- | Minus |
X | 9643657..9643887 | 452..682 | 100 | <- | Minus |
X | 9643957..9644367 | 41..451 | 100 | <- | Minus |
X | 9658847..9658870 | 17..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:28:11 Download gff for
BO27789.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9523140..9523365 | 2184..2409 | 99 | <- | Minus |
arm_X | 9523429..9523636 | 1976..2183 | 100 | <- | Minus |
arm_X | 9523701..9523930 | 1746..1975 | 100 | <- | Minus |
arm_X | 9523996..9524156 | 1585..1745 | 100 | <- | Minus |
arm_X | 9524227..9525128 | 683..1584 | 100 | <- | Minus |
arm_X | 9537690..9537920 | 452..682 | 100 | <- | Minus |
arm_X | 9537990..9538400 | 41..451 | 100 | <- | Minus |
arm_X | 9552880..9552903 | 17..40 | 100 | | Minus |
BO27789.pep Sequence
Translation from 16 to 2425
> BO27789.pep
MEAEQQEFAVKQFIDLCNNLGANCSTTTATSPSTSSSSASSTQNLIAVVP
PQLQQLQVQLPAPGGGGGAGAGGGGGGGGGAAPVRRHISHTTAVKFLYAR
KFDIPRAVSLYEQHEQIRLKEYLYNIDPDVEPLRSELQTGKFTILPARTS
SGAAIALFTANRHSPLSVSHTTTLQGIVYQLDSALQDSETQRAGLVFIYD
MSGSKYSNFDYDLSQKILTLLKGGYPARLKKVLIVTAPLWFKAPFKILRL
FVREKLRERVFTVSVPQLALHVPRKALPIHLGGTLEVDHATWLLSCRQSM
TNREDELLANIVGVGGGSGSGSAAGSAAIVSTNGTETEAATTAATIISAV
HQLGDNNTTVVTVSNGVGPAGSASGGATTAASAATEPNENITINGLSPSH
RQAANNSSSSSSSAATVANPLKLNTSGSADNNSTITNATTAAGAAGAAAG
TTTNGGGEFWSENPPSSASSGFSDDDSLAGQEGDPKPIDQIVQMVKQRGR
HGLIKEYADIRNRAPEGTFLHARMRANLTKNRYTDVLCYDHSRVVLAHED
GDEPSDYINANFVDGYKQKNAYISTQGPLPKTSQDFWRMIWEQHCLVIVM
TTRVMERGRVKCGQYWEPTEESSLEFGDYHVRTISVECNEDYMVASLELR
NIKTDEIRNVSHWQFTSWPDYGVPSSAMAMLNFLQKVREKQAQLVQGLGD
TWAGHPRGPPIVVHCSAGIGRTGTFITLDICISRLEDVGTADIRGTVEKI
RSQRAYSIQMPDQYVFCHLALIEYAYSRGMLQTVDLAGFDEREPDSEASF
LDH
BO27789.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:10:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0232-PC | 797 | CG32697-PC | 1..797 | 1..797 | 4120 | 100 | Plus |
l(1)G0232-PB | 802 | CG32697-PB | 11..802 | 6..797 | 4083 | 99.7 | Plus |
l(1)G0232-PG | 790 | CG32697-PG | 2..790 | 9..797 | 4080 | 100 | Plus |
l(1)G0232-PA | 827 | CG32697-PA | 39..827 | 9..797 | 4080 | 100 | Plus |
l(1)G0232-PF | 597 | CG32697-PF | 1..597 | 201..797 | 3103 | 100 | Plus |