BO27790.complete Sequence
1924 bp assembled on 2010-10-15
GenBank Submission: KX797752
> BO27790.complete
GAAGTTATCAGTCGACATGCCACAGCCAAAGCAAAACCAGCAGAAACAGC
CACAGCCACAACAGCAAAAGCCGCTGCAGAAACATTCCAGCACCAGCTCC
ACGATCATCGCCAAGCCGGAAAAGGAACGGGAACGCACGCAGACGATCGG
CGAAACCGACATGGATCAGTCGGTGCTCAATGGACTGGCAGTGGGCGCAG
ATGGAACCGCCGGCTACCATGGTCACAAGCGAGAACTTGGTCACAGAGTG
TTTGTGAACAGATCGCTGCATTTGGAGAATATCAAGTACTATGGCTTCGA
TATGGACTACACCTTGGCAGAGTACAAGTCACCGCAGTATGAGCAGCTGG
GCTTCAACCTGGTCAAGGAGCGCCTGGTCTTCATGGGCTACCCCAAGGAG
ATCCTGCAGTTCGAGTACGATCCCACCTTCCCAGTACGCGGCCTGTGGTT
CGACACTCTCTACGGGAATCTGCTGAAAGTGGATGCCTACGGCAACATCC
TGGTCTGCGTTCATGGCTTCGAGTTCATCAAACATCACCAGGTGTACGAG
TTGTATCCCAACAAGTTCTTGAAACTGGACGAGTCGCGTGTCTATGTCCT
GAATACTCTCTTCAATCTTCCTGAAACCTATCTCCTTGCCTGTCTCGTCG
ACTTCCTAACCAACAGCAGCGACTTTGTGCGCGTTGAGCGCGGCATCAAA
GCTGGCGATTTACTTTTTACCTACAAGTCGATTTTCCAGGATGTGCGACG
TGCCGTCGACTGGGTGCATTCCGATGGCGATCTGAAGCGTCGCACCACTC
AGAATATGGCTCACTATGTGAAGAAGGACGAGCGTTTGCCCACGGTCCTT
TCGCGAATCCGGGAGTCGGGCGCCAAACTCTTTATGCTGACCAACAGCGA
CTATACGTACACCAACGAGATCATGACCTACCTGTTTGATTTCCCCCATG
GCGCCACTCCGGATGAGCCGCATCGCGACTGGAAGACCTACTTCGATGTG
ATCGTGGTGGATGCCCGCAAGCCGCTCTTCTTCGACGAGGGCACCGTGCT
GCGGCAGGTGGACACGAAGACCGGAAGCCTGAAGATCGGCACACACGTTG
GACCCCTGCAGCCGGGTCAGGTTTATTCCGGTGGCTCCTGCGAGCTCTTT
ACCAAGTTCATCAATGCCAAAGGCAAGGACGTGCTCTATGTGGGCGATCA
CATTTTTGGCGATATTCTCAAATCGAAGAAGATTCGAGGCTGGCGCACCT
TCCTAATTGTGCCCGAATTGGTGAGGGAGCTGCACGTTTGGACGGATGAG
TGCCAGCTGTTTGCGGAGCTACAGAACCTGGACATCAAGCTGGGCGACCT
GTACAGGGATCTCGACTCGAGTGCCAAGGTCAAGCCGGACATTTCGCAGC
TGCGCACGTGCATCCGCGATGTGACACACAAGATGGACATGTCCTACGGT
ATGATGGGCTCACTCTTCCGCTCCGGCTCGCGCCAGACCTTCTTCTCCAG
CCAGGTGGTGCGATATGCCGACGTCTATGCGGCCACCCTGCTCAACCTCA
TTTACTACCCATTCTCGTATATGTTCCGAGCTCCGGCCATGCTTCTGCCC
CATGAGTCGACGGTGGCCCATGATCAGGCCCATCAGCCGCCTCCGCCACT
GGGCCCTGTTCCTGTTCCGGCTACGGGAGCCGCATCGGTGGCTGCCTCGC
CGGATGAGCCGGCTCGCATTTTGGCGGGCACCGCCGAGCACGTTAAGGAC
CCCAAGGACTTGCATCGCGCAAGCTCCATTGTGCACACTCGTCCGTCGAC
GCCCACCGTGGTGACCCACACCCATGACGAGGACTATTCCGAGGAGGAGG
AGACACCCAGTGGTGCCGAGTCTTCCACAGAGGCTGTGCGCGATGCCTCC
GAAGACGCAAGCTTTCTAGACCAT
BO27790.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:02:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32549-RE | 1893 | CG32549-PE | 1..1890 | 17..1906 | 9450 | 100 | Plus |
| CG32549-RH | 2130 | CG32549-PH | 463..2127 | 242..1906 | 8325 | 100 | Plus |
| CG32549-RG | 2130 | CG32549-PG | 463..2127 | 242..1906 | 8325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:02:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32549-RE | 2509 | CG32549-RE | 372..2261 | 17..1906 | 9450 | 100 | Plus |
| CG32549-RH | 2677 | CG32549-RH | 771..2435 | 242..1906 | 8325 | 100 | Plus |
| CG32549-RG | 2806 | CG32549-RG | 900..2564 | 242..1906 | 8325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:02:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18390998..18391968 | 1771..801 | 4855 | 100 | Minus |
| X | 23542271 | X | 18403985..18404214 | 246..17 | 1150 | 100 | Minus |
| X | 23542271 | X | 18392549..18392765 | 534..318 | 1085 | 100 | Minus |
| X | 23542271 | X | 18392335..18392481 | 681..535 | 735 | 100 | Minus |
| X | 23542271 | X | 18390798..18390932 | 1906..1772 | 675 | 100 | Minus |
| X | 23542271 | X | 18392040..18392161 | 802..681 | 610 | 100 | Minus |
| X | 23542271 | X | 18392837..18392914 | 320..243 | 390 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:02:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6853..6947 | 19..114 | 180 | 68 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2595..2678 | 35..116 | 163 | 70.9 | Plus |
BO27790.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-15 09:23:01 Download gff for
BO27790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32549-RE | 349..2238 | 17..1908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:28:19 Download gff for
BO27790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32549-RE | 372..2261 | 17..1908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:12 Download gff for
BO27790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32549-RE | 372..2261 | 17..1908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:12 Download gff for
BO27790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18390796..18390932 | 1772..1908 | 98 | <- | Minus |
| X | 18390998..18391966 | 803..1771 | 100 | <- | Minus |
| X | 18392040..18392160 | 682..802 | 100 | <- | Minus |
| X | 18392335..18392481 | 535..681 | 100 | <- | Minus |
| X | 18392549..18392762 | 321..534 | 100 | <- | Minus |
| X | 18392837..18392910 | 247..320 | 100 | <- | Minus |
| X | 18403985..18404214 | 17..246 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:28:19 Download gff for
BO27790.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18284829..18284965 | 1772..1908 | 98 | <- | Minus |
| arm_X | 18285031..18285999 | 803..1771 | 100 | <- | Minus |
| arm_X | 18286073..18286193 | 682..802 | 100 | <- | Minus |
| arm_X | 18286368..18286514 | 535..681 | 100 | <- | Minus |
| arm_X | 18286582..18286795 | 321..534 | 100 | <- | Minus |
| arm_X | 18286870..18286943 | 247..320 | 100 | <- | Minus |
| arm_X | 18298018..18298247 | 17..246 | 100 | | Minus |
BO27790.pep Sequence
Translation from 16 to 1924
> BO27790.pep
MPQPKQNQQKQPQPQQQKPLQKHSSTSSTIIAKPEKERERTQTIGETDMD
QSVLNGLAVGADGTAGYHGHKRELGHRVFVNRSLHLENIKYYGFDMDYTL
AEYKSPQYEQLGFNLVKERLVFMGYPKEILQFEYDPTFPVRGLWFDTLYG
NLLKVDAYGNILVCVHGFEFIKHHQVYELYPNKFLKLDESRVYVLNTLFN
LPETYLLACLVDFLTNSSDFVRVERGIKAGDLLFTYKSIFQDVRRAVDWV
HSDGDLKRRTTQNMAHYVKKDERLPTVLSRIRESGAKLFMLTNSDYTYTN
EIMTYLFDFPHGATPDEPHRDWKTYFDVIVVDARKPLFFDEGTVLRQVDT
KTGSLKIGTHVGPLQPGQVYSGGSCELFTKFINAKGKDVLYVGDHIFGDI
LKSKKIRGWRTFLIVPELVRELHVWTDECQLFAELQNLDIKLGDLYRDLD
SSAKVKPDISQLRTCIRDVTHKMDMSYGMMGSLFRSGSRQTFFSSQVVRY
ADVYAATLLNLIYYPFSYMFRAPAMLLPHESTVAHDQAHQPPPPLGPVPV
PATGAASVAASPDEPARILAGTAEHVKDPKDLHRASSIVHTRPSTPTVVT
HTHDEDYSEEEETPSGAESSTEAVRDASEDASFLDH
BO27790.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:11:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32549-PE | 630 | CG32549-PE | 1..630 | 1..630 | 3331 | 100 | Plus |
| CG32549-PH | 709 | CG32549-PH | 151..709 | 72..630 | 2941 | 99.5 | Plus |
| CG32549-PG | 709 | CG32549-PG | 151..709 | 72..630 | 2941 | 99.5 | Plus |
| CG32549-PF | 612 | CG32549-PF | 54..612 | 72..630 | 2941 | 99.5 | Plus |
| CG32549-PB | 612 | CG32549-PB | 54..612 | 72..630 | 2941 | 99.5 | Plus |
