BO27837.complete Sequence
1126 bp assembled on 2010-09-30
GenBank Submission: KX793757
> BO27837.complete
GAAGTTATCAGTCGACATGAGATCGATTGCCACCAACTCCCTGCTGCCAC
TGATTGTGGCCTTGCTGATCGCCGGTAGTAATGCCTCCCTCCCACGCAGG
GGCAGCAGAAATCAAAGCCAGAATCGCACCATGTCCGCTGGCAAGGCTTT
CAAGGTCCTGGTGACACATCCCGAGGTTCCCCAGGAGGGCATTGATCTGC
TGAAGGAGAACTGCGAGATCGTCCAGGTGCAGAGTGTTCCCATCAACCGG
GCGGAGCTGCTGGAGAAAATCCGTGGCGTGGATGGCGTTCTCTGGGGTGG
ACACGAACCCCTCAATGCCGAGGCCCTCGATGCTGCCGGTCCCCAGCTGA
AATCCATCTCCACCATGTCGGCGGGAATCGACTACGTCGATGTGCCGGAG
GTAAAGAGACGTAAGATCCCGCTGGGACACACGCCCACCGTTCTCAACAC
CGCCGTGGCCGATTTGGCAGTGGGTCTCCTGATCGCCGCCAGTCGCCGTT
TTCACGAGGGTCGCAAGACCATCGACAATGACAAGTGGGAAAACTACCAT
CTTAACTGGCTGTTGGGCCAGGATATTCGTGATTCCACCGTGGGATTCTA
CGGCTTTGGAGGCATTGGTCAGGCTATTGCCAAGCGTTTGTCTGGATTCG
ACATTGACAAGGTGCTGTACACCACCCGTCGTCGTGTTCACAAGGAGATC
GAGGAGGAGTTCAATGCCAAGAAAGTTGACTTCGATACCCTTCTGGCCGA
GAGTGACTTCGTAGTGATCGCTTCTCCTTTGACGAAGGACACACAGGGCG
TCTTTAATGCCACCGCCTTCAACAAGATGAAGCAGACTGCTGTGCTGGTT
AACATTGCCAGGGGCAAAATCGTCAACCAGGATGACCTCTACGAGGCTTT
GAAAGCCAACCGAATCTTTTCCGCCGGACTCGACGTCACGGATCCGGAAC
CATTGTCGCCCAAGGACAAGCTGCTGACGCTTGACAATGTTGTTGTCCTG
CCCCATATTGGATCCGCCACGAAGCGCACCCGTGCCGACATGTCCACCAT
TGCTGCCCATAATGTGCTCCGCGGTTTGGCTGGGGAGCCCATGTTGTCGC
CCGCCTACGCAAGCTTTCTAGACCAT
BO27837.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:14:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9331-RL | 1095 | CG9331-PL | 1..1092 | 17..1108 | 5460 | 100 | Plus |
| CG9331-RA | 1095 | CG9331-PA | 1..1092 | 17..1108 | 5460 | 100 | Plus |
| CG9331-RI | 1095 | CG9331-PI | 92..1092 | 108..1108 | 5005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:14:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9331-RL | 1346 | CG9331-RL | 138..1234 | 12..1108 | 5470 | 99.9 | Plus |
| CG9331-RG | 1369 | CG9331-RG | 161..1257 | 12..1108 | 5470 | 99.9 | Plus |
| CG9331-RA | 1244 | CG9331-RA | 36..1132 | 12..1108 | 5470 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:14:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20825571..20826087 | 12..528 | 2570 | 99.8 | Plus |
| 2L | 23513712 | 2L | 20826633..20826970 | 529..866 | 1690 | 100 | Plus |
| 2L | 23513712 | 2L | 20827032..20827157 | 867..992 | 630 | 100 | Plus |
| 2L | 23513712 | 2L | 20827496..20827612 | 992..1108 | 585 | 100 | Plus |
| 2L | 23513712 | 2L | 20831946..20832287 | 525..866 | 570 | 77.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:14:43 has no hits.
BO27837.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-30 16:20:28 Download gff for
BO27837.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RA | 42..1133 | 17..1110 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:31 Download gff for
BO27837.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RA | 41..1132 | 17..1110 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:13:56 Download gff for
BO27837.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RA | 41..1132 | 17..1110 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:13:56 Download gff for
BO27837.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20827497..20827612 | 993..1110 | 98 | | Plus |
| 2L | 20825576..20826087 | 17..528 | 100 | -> | Plus |
| 2L | 20826633..20826970 | 529..866 | 100 | -> | Plus |
| 2L | 20827032..20827157 | 867..992 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:31 Download gff for
BO27837.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20825576..20826087 | 17..528 | 100 | -> | Plus |
| arm_2L | 20826633..20826970 | 529..866 | 100 | -> | Plus |
| arm_2L | 20827032..20827157 | 867..992 | 100 | -> | Plus |
| arm_2L | 20827497..20827612 | 993..1110 | 98 | | Plus |
BO27837.pep Sequence
Translation from 16 to 1126
> BO27837.pep
MRSIATNSLLPLIVALLIAGSNASLPRRGSRNQSQNRTMSAGKAFKVLVT
HPEVPQEGIDLLKENCEIVQVQSVPINRAELLEKIRGVDGVLWGGHEPLN
AEALDAAGPQLKSISTMSAGIDYVDVPEVKRRKIPLGHTPTVLNTAVADL
AVGLLIAASRRFHEGRKTIDNDKWENYHLNWLLGQDIRDSTVGFYGFGGI
GQAIAKRLSGFDIDKVLYTTRRRVHKEIEEEFNAKKVDFDTLLAESDFVV
IASPLTKDTQGVFNATAFNKMKQTAVLVNIARGKIVNQDDLYEALKANRI
FSAGLDVTDPEPLSPKDKLLTLDNVVVLPHIGSATKRTRADMSTIAAHNV
LRGLAGEPMLSPAYASFLDH
BO27837.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:34:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9331-PL | 364 | CG9331-PL | 1..364 | 1..364 | 1842 | 100 | Plus |
| CG9331-PA | 364 | CG9331-PA | 1..364 | 1..364 | 1842 | 100 | Plus |
| CG9331-PI | 364 | CG9331-PI | 32..364 | 32..364 | 1698 | 100 | Plus |
| CG9331-PH | 364 | CG9331-PH | 32..364 | 32..364 | 1698 | 100 | Plus |
| CG9331-PM | 364 | CG9331-PM | 32..364 | 32..364 | 1698 | 100 | Plus |
