BO27841.complete Sequence
2941 bp assembled on 2010-11-05
GenBank Submission: KX794409
> BO27841.complete
GAAGTTATCAGTCGACATGAACTCCGAGCATGGATTTAATCCAGCCTTCA
ATATGGCCACCATACGGCAAGCATTCACAGAGGCGGTGGAGAGAGTCAGA
ATGCCTACGCCCACACGCCTGCGCGACCTCATCCGACAGATTCGCGCCGC
CAGAACCGCCGCCGAGGAGCGGGCGGTGGTCAACAAAGAGTGCGCCTACA
TACGGAGCACGTTCCGCGAGGAGGACTCCGTCTGGCGCTGTCGCAACATT
GCCAAGCTGCTGTACATACACATGCTCGGCTATCCGGCTCACTTTGGCCA
ACTGGAGTGCCTTAAGCTGACGGCCAGCACGCGGTTCACAGACAAGCGGA
TCGGCTACCTGGGCGCCATGCTGCTGCTGGATGAGCGGCAGGATGTCCAC
CTGCTTATCACCAACTGCTTGAAGAACGACTTGAACAGCTCGACGCAGTT
CGTCGTGGGCCTAGCCCTATGCACTCTGGGTGCGATCGCCTCACCGGAGA
TGGCCCGAGATCTGGCCAGCGAGGTGGAGCGTCTGATGAAGTCCCCGAAC
ACGTACATTCGCAAGAAGGCGACGCTGTGCGCCTTTCGCGTCATTCGCCG
TGTGCCCGAGCTAATGGAGATCTTCTTGCCGGCCACGCGTTCCCTGCTCA
GCGAGAAGAATCATGGAATTTTGATCACTGGCGTTACGCTGATCACGGAG
ATGTGCGAGAACAGTTCGGACACGCTGATGCATTTCAAGAAGGATAGCGG
AAATCGAGAGATTGTGCCGAACTTGGTGCGCATCCTGAAGAATCTGATCC
TGGGCGGCTATTCGCCGGAGCACGATGTCAGCGGCGTGAGCGATCCGTTC
CTGCAGGTGAAGATACTGCGACTGCTGCGCATACTGGGCCACAACGATCC
GGACGCCTCGGAGGCGATGAACGATATACTGGCCCAGGTGGCCACCAACA
CGGAGACGAGCAAGAATGTGGGCAATACCATCCTCTACGAGACCGTGCTC
TCCATCATGGACATACGCTCGGAGGGTGGACTGCGCGTCCTGGCCGTCAA
TATACTGGGACGATTCCTGCTCAACTCGGACAAGAACATACGGTATGTGG
CACTGAACACGCTGCTGCGAACGGTGCATGCGGACACGTCGGCGGTGCAG
CGGCATCGCACCACCATTCTGGAGTGCCTCAAGGATCCGGACGTCTCGAT
CCGTCGGCGGGCGATGGAGCTATCGTTTGCGCTGATCAATGCACAAAACA
TACGTACAATGACCAAGGAGCTGCTGCTCTTCCTCGAGAAGGCGGACGCC
GAGTTCAAGGCGCAGTGCAGCTCGGGCATGATACTGGCCGCCGAGCGTTA
CTCCCCGACAACGCGCTGGCATCTGGATACGCAGCTGAGCGTGCTGATTG
CAGCGGGAAACTATGTGCGCGACGACGTCGTCTCCTCCACCATCCAGCTG
GTGTCCAGCAGTCCCGTCCCGGAGCAGACGTACATCACGAACCGTTTCTG
GGAGTCGCTGCAGGTGGCCAATCATTGCGAGGACAAGCAGCCGCTGCTGC
AGGTTGCCGTCTGGGCCATAGGCGAGTACGGCGATCTCTTTATGTACGGC
GCCAACGAGGATGAGTTTGAACGGCCCACTGAGAGTGATCTGATCGCTGT
GTATTATAAGTTTTTAACCTCTGCTCAAGTCTCGACCACAAGCAAGCAAT
ATGCTCTGGTCTCCCTAGCCAAGCTAAGCACACGTTTGCAACAGTGCGTG
GAGGAAATTCAGGCACTGATCACGTCTTTTGGTAGCCATCTGAATGTGGA
TCTGCAGCAGCGAGGCGTGGAGTTCACACAGCTCTTTGGCCATTACAAGC
ATCTGCGTCCACCGCTGCTGGAAAAGATGCCGGCCATGCAGATCAGCAGG
ATTAGCTCGCAGAATGGCGAGAGCGGCGGTGGCTCCTTCGACGACAACAG
TCCCGATGTCATCGAAAATGGCGTGGAAGGAGGCGGCGGTGGCGGACACT
CACTTATCGAAAGCAATATGAACACCCTTGGTGACAATACGAACATTTTG
CTAGATCTGCTGGGCAGCACGGATCTCTCTGCGGGAGGAGCTGGTGATTT
GGTGGCAGCCACGGATCTCTCGAATGCCGTGCATAAAAAGAACTCGCGCA
ATGCCAACGATGTGGTGGCGCCCGTTTCCAATAACCAGGATCTGTTGGAT
CTGCTCGATCTGGATCTATCGGCGCCCTCGTCCACGACGACGGGTGCGCC
AGCGGGCGGAGGAGGAGGCGGTGGCATTGTGGCTCTGGTGGGCGATAATA
ACCAGAGCAGTGCGGCAAACATGAATAACATGCTCGGTGGCCTGGACTTG
GGCGGCTTTGGATCTGGTCTGGACAGCTCTGCCAGCATACCCACAAACGG
CAACGATTTGGCCAGCATGCTGGGTGGCCTGGGTGCCCCGCCGGCTGCAT
CACCGTCTCTGGCGGCATCAGCTCCCGTTGGCAACCTTATCGATGGCCAT
GCCGGCAGTCTGCTGGCCGATCTGAATCCCACGGCTGCCTCCAACAATGT
AGTAGTGCCTCCACAGGGTCCCAGGCTGACGGCGCTGGACAAGGATGGGT
TACTCGTGCAACTGGTTTCGGTCAGGGGCAGCGACTGCATGCGCATCTAT
ATGACGACCACGAATAACTCAGACAATACCCTGGATCAGTACTTGCTGCA
GGCGGCTGTGCAAAGGAGTTTCCAGCTGCAGATGCTGACGCCATCTGGTT
CCGTGCTGCCGCCCGGCGGAGTTATAACGCAGGAGATGCGCGTGGTGGCC
ACGTCGAATGCGACACTGCGGATGCGTTTGCGCATACAGTACGTGCTCGA
TGGCCAGCAGCAGGTGGAACAGACGGAGGTCAGTGGATTCCCCGAGCAGC
AGCCGGCGCCGGCGGCCGCAGAGGCAAGCTTTCTAGACCAT
BO27841.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:32:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AP-1gamma-RH | 2910 | CG9113-PH | 1..2907 | 17..2923 | 14535 | 100 | Plus |
| AP-1gamma-RC | 2910 | CG9113-PC | 1..2907 | 17..2923 | 14535 | 100 | Plus |
| AP-1gamma-RD | 2949 | CG9113-PD | 56..2946 | 33..2923 | 14455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:32:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AP-1gamma-RH | 4997 | CG9113-RH | 606..3512 | 17..2923 | 14535 | 100 | Plus |
| AP-1gamma-RC | 4761 | CG9113-RC | 375..3281 | 17..2923 | 14535 | 100 | Plus |
| AP-1gamma-RD | 4666 | CG9113-RD | 296..3186 | 33..2923 | 14455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:32:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9113974..9114570 | 1017..1613 | 2985 | 100 | Plus |
| X | 23542271 | X | 9115195..9115711 | 2041..2557 | 2585 | 100 | Plus |
| X | 23542271 | X | 9114838..9115126 | 1753..2041 | 1445 | 100 | Plus |
| X | 23542271 | X | 9113641..9113899 | 759..1017 | 1295 | 100 | Plus |
| X | 23542271 | X | 9111854..9112093 | 427..666 | 1200 | 100 | Plus |
| X | 23542271 | X | 9111597..9111786 | 237..426 | 950 | 100 | Plus |
| X | 23542271 | X | 9115764..9115909 | 2557..2702 | 730 | 100 | Plus |
| X | 23542271 | X | 9111385..9111528 | 94..237 | 720 | 100 | Plus |
| X | 23542271 | X | 9114633..9114773 | 1613..1753 | 705 | 100 | Plus |
| X | 23542271 | X | 9116146..9116259 | 2810..2923 | 570 | 100 | Plus |
| X | 23542271 | X | 9115968..9116079 | 2699..2810 | 560 | 100 | Plus |
| X | 23542271 | X | 9112162..9112240 | 665..743 | 395 | 100 | Plus |
| X | 23542271 | X | 9111081..9111143 | 33..95 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:32:27 has no hits.
BO27841.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-05 18:07:08 Download gff for
BO27841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1gamma-RC | 323..3229 | 17..2925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:32:39 Download gff for
BO27841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1gamma-RC | 375..3281 | 17..2925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:15:15 Download gff for
BO27841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AP-1gamma-RC | 375..3281 | 17..2925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:15:15 Download gff for
BO27841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9111854..9112092 | 427..665 | 100 | -> | Plus |
| X | 9112163..9112239 | 666..742 | 100 | -> | Plus |
| X | 9112750..9112767 | 743..760 | 100 | -> | Plus |
| X | 9110989..9111005 | 17..33 | 100 | -> | Plus |
| X | 9111082..9111143 | 34..95 | 100 | -> | Plus |
| X | 9111387..9111528 | 96..237 | 100 | -> | Plus |
| X | 9111598..9111786 | 238..426 | 100 | -> | Plus |
| X | 9113975..9114570 | 1018..1613 | 100 | -> | Plus |
| X | 9114634..9114772 | 1614..1752 | 100 | -> | Plus |
| X | 9114838..9115126 | 1753..2041 | 100 | -> | Plus |
| X | 9115196..9115711 | 2042..2557 | 100 | -> | Plus |
| X | 9115765..9115908 | 2558..2701 | 100 | -> | Plus |
| X | 9115971..9116078 | 2702..2809 | 100 | -> | Plus |
| X | 9116146..9116259 | 2810..2925 | 98 | | Plus |
| X | 9113643..9113899 | 761..1017 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:32:39 Download gff for
BO27841.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9009798..9009941 | 2558..2701 | 100 | -> | Plus |
| arm_X | 9010004..9010111 | 2702..2809 | 100 | -> | Plus |
| arm_X | 9010179..9010292 | 2810..2925 | 98 | | Plus |
| arm_X | 9008871..9009159 | 1753..2041 | 100 | -> | Plus |
| arm_X | 9005022..9005038 | 17..33 | 100 | -> | Plus |
| arm_X | 9005115..9005176 | 34..95 | 100 | -> | Plus |
| arm_X | 9005420..9005561 | 96..237 | 100 | -> | Plus |
| arm_X | 9005631..9005819 | 238..426 | 100 | -> | Plus |
| arm_X | 9005887..9006125 | 427..665 | 100 | -> | Plus |
| arm_X | 9006196..9006272 | 666..742 | 100 | -> | Plus |
| arm_X | 9006783..9006800 | 743..760 | 100 | -> | Plus |
| arm_X | 9007676..9007932 | 761..1017 | 100 | -> | Plus |
| arm_X | 9008008..9008603 | 1018..1613 | 100 | -> | Plus |
| arm_X | 9008667..9008805 | 1614..1752 | 100 | -> | Plus |
| arm_X | 9009229..9009744 | 2042..2557 | 100 | -> | Plus |
BO27841.pep Sequence
Translation from 16 to 2941
> BO27841.pep
MNSEHGFNPAFNMATIRQAFTEAVERVRMPTPTRLRDLIRQIRAARTAAE
ERAVVNKECAYIRSTFREEDSVWRCRNIAKLLYIHMLGYPAHFGQLECLK
LTASTRFTDKRIGYLGAMLLLDERQDVHLLITNCLKNDLNSSTQFVVGLA
LCTLGAIASPEMARDLASEVERLMKSPNTYIRKKATLCAFRVIRRVPELM
EIFLPATRSLLSEKNHGILITGVTLITEMCENSSDTLMHFKKDSGNREIV
PNLVRILKNLILGGYSPEHDVSGVSDPFLQVKILRLLRILGHNDPDASEA
MNDILAQVATNTETSKNVGNTILYETVLSIMDIRSEGGLRVLAVNILGRF
LLNSDKNIRYVALNTLLRTVHADTSAVQRHRTTILECLKDPDVSIRRRAM
ELSFALINAQNIRTMTKELLLFLEKADAEFKAQCSSGMILAAERYSPTTR
WHLDTQLSVLIAAGNYVRDDVVSSTIQLVSSSPVPEQTYITNRFWESLQV
ANHCEDKQPLLQVAVWAIGEYGDLFMYGANEDEFERPTESDLIAVYYKFL
TSAQVSTTSKQYALVSLAKLSTRLQQCVEEIQALITSFGSHLNVDLQQRG
VEFTQLFGHYKHLRPPLLEKMPAMQISRISSQNGESGGGSFDDNSPDVIE
NGVEGGGGGGHSLIESNMNTLGDNTNILLDLLGSTDLSAGGAGDLVAATD
LSNAVHKKNSRNANDVVAPVSNNQDLLDLLDLDLSAPSSTTTGAPAGGGG
GGGIVALVGDNNQSSAANMNNMLGGLDLGGFGSGLDSSASIPTNGNDLAS
MLGGLGAPPAASPSLAASAPVGNLIDGHAGSLLADLNPTAASNNVVVPPQ
GPRLTALDKDGLLVQLVSVRGSDCMRIYMTTTNNSDNTLDQYLLQAAVQR
SFQLQMLTPSGSVLPPGGVITQEMRVVATSNATLRMRLRIQYVLDGQQQV
EQTEVSGFPEQQPAPAAAEASFLDH
BO27841.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:45:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AP-1gamma-PH | 969 | CG9113-PH | 1..969 | 1..969 | 4902 | 100 | Plus |
| AP-1gamma-PC | 969 | CG9113-PC | 1..969 | 1..969 | 4902 | 100 | Plus |
| AP-1gamma-PD | 982 | CG9113-PD | 20..982 | 7..969 | 4868 | 100 | Plus |
| AP-1gamma-PI | 963 | CG9113-PI | 1..963 | 1..969 | 4853 | 99.4 | Plus |
| AP-1gamma-PF | 963 | CG9113-PF | 1..963 | 1..969 | 4853 | 99.4 | Plus |
