Clone BO27849 Report

Search the DGRC for BO27849

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:278
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG31244-RA
Protein status:BO27849.pep: Imported from assembly
Sequenced Size:997

Clone Sequence Records

BO27849.complete Sequence

997 bp assembled on 2010-10-13

GenBank Submission: KX799922

> BO27849.complete
GAAGTTATCAGTCGACATGCATAACAACAGCTGTTTAGAACCCATGGACA
GGACCAAGACTACGAAACTTCCTCAGCTCAAGTCCAGCGTTACTCCCTAC
AGACCAAAGCCGAACCTAATCCGTAGTGATTCCCCGAAATTAGAGAACGA
TAAGCGTAATGGGCTGGACTTGGAGCTTCTGGATAATCCAGAGATACCGA
GCGTAAAGCGAGTACGATGGGCTCCGATGTATGGGGAAAGGAGCCCGAGT
AAGACCGGCTTTACCAGCGTTCCACTAAGCTCCAAAAAGGCGCAGTTTGA
TCATGATACGACAGATGAGTTAATACTGGCTAACGAGCTTCGATTAGCGG
TGCATCGTGGGGGAGGTTCCATAGATCCCGACAAGAACTACGAGCTGAGG
GCTCGACTGTCGCCCTTGCAATTGCCGTACAGTCGAGTGCAGCGAATTCT
GAAGGAGTGCGAGTTGAGCGAGAGGAATCATCACACCTATAGTATACCCA
TGGACTATGGGCGGCAATTGGTTGCCATGGTTTGCAAGATCAGGACGGAT
AATCTCCCCGAACTGAAACTTCGCTTGGCCTCCTTACTGCGGCAAAACAA
AGCGCGCTTCTTCAATCGACATTTATTCAACGAAACTGGCTTGATTGAGG
CCACATTGCCGAGCGTAACACCATTAAGCTTTGAGGAATTCAATCAAACG
TTGCGAATTGATGCTTTGTGGTGCAAAGCCACCGATAGTACCATTACCGA
TTTGGCCAAAGGATCTGTTTTGTTCAAATGTCGGCCTCTGGACCTGCAAG
AGGTCGCGTACAAACTCAGGCAGTGCAACTACAAGATTGTACATAAGGAG
GTTGGACACTGTCCAAACAAGCCGCTCGTCGAGTTAAATGATCGTCAAAT
GGCCCGCTATCAGGAGTTTCGTAAAAACCTTCTTCAAGACATAGATGTCG
TAAAGATCTATGACAATGTGCGTGTCCAGGCAAGCTTTCTAGACCAT

BO27849.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG31244-RA 966 CG31244-PA 1..963 17..979 4815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:59:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG31244-RA 1138 CG31244-RA 86..1048 17..979 4815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19397520..19398482 979..17 4815 100 Minus
Blast to na_te.dros performed on 2014-11-26 14:59:41 has no hits.

BO27849.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-13 16:52:32 Download gff for BO27849.complete
Subject Subject Range Query Range Percent Splice Strand
CG31244-RA 86..1048 17..981 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:28:01 Download gff for BO27849.complete
Subject Subject Range Query Range Percent Splice Strand
CG31244-RA 86..1048 17..981 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:16 Download gff for BO27849.complete
Subject Subject Range Query Range Percent Splice Strand
CG31244-RA 86..1048 17..981 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:16 Download gff for BO27849.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19397518..19398482 17..981 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:28:01 Download gff for BO27849.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15223240..15224204 17..981 99   Minus

BO27849.pep Sequence

Translation from 16 to 997

> BO27849.pep
MHNNSCLEPMDRTKTTKLPQLKSSVTPYRPKPNLIRSDSPKLENDKRNGL
DLELLDNPEIPSVKRVRWAPMYGERSPSKTGFTSVPLSSKKAQFDHDTTD
ELILANELRLAVHRGGGSIDPDKNYELRARLSPLQLPYSRVQRILKECEL
SERNHHTYSIPMDYGRQLVAMVCKIRTDNLPELKLRLASLLRQNKARFFN
RHLFNETGLIEATLPSVTPLSFEEFNQTLRIDALWCKATDSTITDLAKGS
VLFKCRPLDLQEVAYKLRQCNYKIVHKEVGHCPNKPLVELNDRQMARYQE
FRKNLLQDIDVVKIYDNVRVQASFLDH

BO27849.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 15:09:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG31244-PA 321 CG31244-PA 1..321 1..321 1681 100 Plus
CG4957-PA 246 CG4957-PA 28..243 104..318 161 24.7 Plus