BO27862.complete Sequence
475 bp assembled on 2010-09-30
GenBank Submission: KX796771
> BO27862.complete
GAAGTTATCAGTCGACATGCAGCAAGTCGATGAAAATCTGAAGAAGAAGC
GTACCTTCAAGAAGTTCACCTACCGCGGTGTCGACTTGGACCAGCTTCTG
GACATGCCCAACAACCAGCTGGTGGAGCTGATGCACAGCCGTGCCCGCAG
GCGTTTCTCCCGCGGACTGAAGCGCAAGCCAATGGCTCTGATCAAGAAGC
TGCGCAAGGCCAAGAAGGAGGCACCGCCAAATGAGAAGCCCGAGATTGTC
AAGACCCACCTGAGGAACATGATCATCGTACCCGAGATGACCGGCTCCAT
CATTGGCGTCTACAACGGCAAGGACTTCGGACAGGTGGAGGTCAAGCCCG
AGATGATCGGTCACTACCTGGGCGAGTTCGCCCTGACCTACAAGCCCGTC
AAGCACGGTCGTCCTGGTATCGGTGCCACCCACAGCTCCCGTTTCATTCC
TCTGAAGGCAAGCTTTCTAGACCAT
BO27862.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:17:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS15-RB | 444 | CG8332-PB | 1..441 | 17..457 | 2205 | 100 | Plus |
| RpS15-RA | 447 | CG8332-PA | 10..444 | 23..457 | 2175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:17:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS15-RB | 726 | CG8332-RB | 220..660 | 17..457 | 2205 | 100 | Plus |
| RpS15-RA | 627 | CG8332-RA | 43..477 | 23..457 | 2175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:17:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16570624..16570848 | 336..112 | 1125 | 100 | Minus |
| 2R | 25286936 | 2R | 16570262..16570388 | 457..331 | 635 | 100 | Minus |
| 2R | 25286936 | 2R | 16570917..16571011 | 111..17 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:17:23 has no hits.
BO27862.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-30 16:20:33 Download gff for
BO27862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15-RB | 195..635 | 17..459 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:56 Download gff for
BO27862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15-RB | 220..660 | 17..459 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:14:47 Download gff for
BO27862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15-RB | 220..660 | 17..459 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:14:47 Download gff for
BO27862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16570259..16570384 | 335..459 | 98 | <- | Minus |
| 2R | 16570626..16570848 | 112..334 | 100 | <- | Minus |
| 2R | 16570917..16571011 | 17..111 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:56 Download gff for
BO27862.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12457764..12457889 | 335..459 | 98 | <- | Minus |
| arm_2R | 12458131..12458353 | 112..334 | 100 | <- | Minus |
| arm_2R | 12458422..12458516 | 17..111 | 100 | | Minus |
BO27862.pep Sequence
Translation from 16 to 475
> BO27862.pep
MQQVDENLKKKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSRG
LKRKPMALIKKLRKAKKEAPPNEKPEIVKTHLRNMIIVPEMTGSIIGVYN
GKDFGQVEVKPEMIGHYLGEFALTYKPVKHGRPGIGATHSSRFIPLKASF
LDH
BO27862.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:34:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS15-PB | 147 | CG8332-PB | 1..147 | 1..147 | 764 | 100 | Plus |
| RpS15-PA | 148 | CG8332-PA | 4..148 | 3..147 | 754 | 100 | Plus |
