BO27864.complete Sequence
871 bp assembled on 2010-09-23
GenBank Submission: KX796484
> BO27864.complete
GAAGTTATCAGTCGACATGTTCACAGTGGATGCAAGCGAAGGATCATCAG
TTGTAAACGAGACTCCATTAAAAAGCCAATTCCACGATCAGAAGTTGGTT
GAGCACTTTTGCCGGCAGACGCAGCTGCTCAAGCTGGTCCAGGTCTCCTC
TGGCCGCTTTGTGGCGAACTATATGAGCTCCCGGCGGCCAGAGGACCTGC
TGGCCCCCATCCAGCTGCGCCTGGACTTCGAATACCGGCAACTACTCGAT
ATCTCACCGCAACTACTGCAGCTCATCGTCGAGGAACCGCTGCAGTTTCA
AGAAGCGGTCCGCTACTCGGTTTATGGCTTGATCCGCTCACATCTCAAGG
ACGCTGGCCTGAAGCCCATCGATATCAACCAGCTGCACGCCCACTGGCGC
CTGGTGGGACTGCCCTTTACGCCGGGCCTGCAGTTCGAGCCGCGGGACCA
GTTGACCCGGCTGGGCTTGTCCCAGATCCGGGGCATCCTAGCCGCTTTCA
CGCCGCAAGAAACACTGGTCCTACAATCGATCTGGTACTGCGGCAGTGGC
TGTATGCGAAATGCCATACAGACCAGCTCAACAGATGCACCCTTTTGTTC
GAGCTGCTCGCGGCCCATGAGTGAATACCAAAAGCTGCGCGTCACGGAAA
CCTATCGTATCTTGGCTGTCTTGCCTATTTCGGCAGTTCAGACACCTCGT
GTCACCAATTGCCTTCATCGCCCAAAATTAGTTCGCCTTAGAGCCCACGC
CCACGACTGCGAATTAAAGTTGGGTGCTAGCTACCTAATCACTGGATACT
TTGCGAGCTCAGCCAGCACATATCAACTGGAAGCATGTCATCTACGAATA
AACGCAAGCTTTCTAGACCAT
BO27864.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:06:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mei-217-RC | 840 | CG33935-PC | 1..837 | 17..853 | 4185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:06:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mei-217-RC | 5005 | CG33935-RC | 128..964 | 17..853 | 4185 | 100 | Plus |
| mei-218-RC | 5005 | CG8923-RC | 128..964 | 17..853 | 4185 | 100 | Plus |
| mei-218-RD | 6125 | CG8923-RD | 212..652 | 79..519 | 2205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:06:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17142267..17142707 | 519..79 | 2205 | 100 | Minus |
| X | 23542271 | X | 17141326..17141482 | 743..587 | 785 | 100 | Minus |
| X | 23542271 | X | 17141094..17141205 | 853..742 | 560 | 100 | Minus |
| X | 23542271 | X | 17141694..17141761 | 587..520 | 340 | 100 | Minus |
| X | 23542271 | X | 17142802..17142863 | 78..17 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:06:31 has no hits.
BO27864.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-23 15:57:16 Download gff for
BO27864.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mei-217-RB | 133..964 | 22..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:33 Download gff for
BO27864.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mei-218-RC | 133..964 | 22..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:11:06 Download gff for
BO27864.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mei-218-RC | 133..964 | 22..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:11:06 Download gff for
BO27864.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17141092..17141203 | 744..855 | 98 | <- | Minus |
| X | 17141326..17141481 | 588..743 | 100 | <- | Minus |
| X | 17141694..17141761 | 520..587 | 100 | <- | Minus |
| X | 17142267..17142707 | 79..519 | 100 | <- | Minus |
| X | 17142802..17142858 | 22..78 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:33 Download gff for
BO27864.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17035125..17035236 | 744..855 | 98 | <- | Minus |
| arm_X | 17035359..17035514 | 588..743 | 100 | <- | Minus |
| arm_X | 17035727..17035794 | 520..587 | 100 | <- | Minus |
| arm_X | 17036300..17036740 | 79..519 | 100 | <- | Minus |
| arm_X | 17036835..17036891 | 22..78 | 100 | | Minus |
BO27864.pep Sequence
Translation from 16 to 871
> BO27864.pep
MFTVDASEGSSVVNETPLKSQFHDQKLVEHFCRQTQLLKLVQVSSGRFVA
NYMSSRRPEDLLAPIQLRLDFEYRQLLDISPQLLQLIVEEPLQFQEAVRY
SVYGLIRSHLKDAGLKPIDINQLHAHWRLVGLPFTPGLQFEPRDQLTRLG
LSQIRGILAAFTPQETLVLQSIWYCGSGCMRNAIQTSSTDAPFCSSCSRP
MSEYQKLRVTETYRILAVLPISAVQTPRVTNCLHRPKLVRLRAHAHDCEL
KLGASYLITGYFASSASTYQLEACHLRINASFLDH
BO27864.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:33:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mei-217-PC | 279 | CG33935-PC | 1..279 | 1..279 | 1442 | 100 | Plus |
