Clone BO27875 Report

Search the DGRC for BO27875

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:278
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCG9410-RA
Protein status:BO27875.pep: Imported from assembly
Sequenced Size:655

Clone Sequence Records

BO27875.complete Sequence

655 bp assembled on 2010-09-30

GenBank Submission: KX795607

> BO27875.complete
GAAGTTATCAGTCGACATGCTAAAGGGTAGCACACTGAAAGCCCTGGACG
TCAGAATCCTATGGCCCCTTATTGAAACAAGTGGAGGACACCAGCGCAGC
TTCTCCAGCAGCACCCACCGGTCCTACATAACATTCAATGATTTCCGCAA
AAAACACCGCTGGTACACAAAAAAGGAGCTTGTGGGCTACTCCATGCAGG
ACATGTACAGCGTGGTTTCCGACGTCAGCAATTACCACAAGTTCGTGCCG
TATGTGAAGCGCTCCGATGTGCACAGCCGGGGAAGTGAGGGCTTCAAGGC
GGACCTCATTGTTGGCTTTCCGCCGCTTAACGAGGCCTACACCTCGCAGG
TGACCCTGGTGCCGCCCAGCTTGGTTAAGTCAGAGTGCCACGATGGACGT
CTGTTCAACTACCTCCTGAATGAGTGGTCTTTTAAGCCGGGCCTCAAGGA
CATACCTAACTCCTGCGTGCTGGACTTCAAGGTATCGTTCGAGTTCAAGT
CCCTCCTGCACAGCAACGTCGCCAACATATTTTTTGACCTTATCTGCGAT
CAAATGGAAAACGCTTTTATCCAGGAGGTCCGTCGACGGAGTGGTCCGCC
CTCAATCCGCTCCCACGTGCTTACTTCGGATCGGTCCGCAAGCTTTCTAG
ACCAT

BO27875.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:17:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG9410-RA 624 CG9410-PA 1..621 17..637 3105 100 Plus
CG9410-RB 729 CG9410-PB 169..726 80..637 2790 100 Plus
CG9410-RE 123 CG9410-PE 1..123 17..131 460 93.5 Plus
CG9410-RB 729 CG9410-PB 1..65 17..81 325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:17:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG9410-RA 891 CG9410-RA 137..757 17..637 3105 100 Plus
CG9410-RE 833 CG9410-RE 71..699 17..637 2990 98.7 Plus
CG9410-RB 930 CG9410-RB 239..796 80..637 2790 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:17:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6669491..6669942 186..637 2260 100 Plus
2R 25286936 2R 6669328..6669434 80..186 535 100 Plus
2R 25286936 2R 6669160..6669224 17..81 325 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:17:46 has no hits.

BO27875.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-30 16:20:33 Download gff for BO27875.complete
Subject Subject Range Query Range Percent Splice Strand
CG9410-RD 583..647 17..81 100 -> Plus
CG9410-RD 753..1308 82..639 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:01 Download gff for BO27875.complete
Subject Subject Range Query Range Percent Splice Strand
CG9410-RA 137..757 17..639 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:14:54 Download gff for BO27875.complete
Subject Subject Range Query Range Percent Splice Strand
CG9410-RA 137..757 17..639 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:14:54 Download gff for BO27875.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6669492..6669942 187..639 99   Plus
2R 6669160..6669224 17..81 100 -> Plus
2R 6669330..6669434 82..186 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:01 Download gff for BO27875.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2556665..2556729 17..81 100 -> Plus
arm_2R 2556835..2556939 82..186 100 -> Plus
arm_2R 2556997..2557447 187..639 99   Plus

BO27875.pep Sequence

Translation from 16 to 655

> BO27875.pep
MLKGSTLKALDVRILWPLIETSGGHQRSFSSSTHRSYITFNDFRKKHRWY
TKKELVGYSMQDMYSVVSDVSNYHKFVPYVKRSDVHSRGSEGFKADLIVG
FPPLNEAYTSQVTLVPPSLVKSECHDGRLFNYLLNEWSFKPGLKDIPNSC
VLDFKVSFEFKSLLHSNVANIFFDLICDQMENAFIQEVRRRSGPPSIRSH
VLTSDRSASFLDH

BO27875.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9410-PA 207 CG9410-PA 1..207 1..207 1093 100 Plus
CG9410-PB 242 CG9410-PB 1..242 1..207 1047 85.5 Plus