BO27875.complete Sequence
655 bp assembled on 2010-09-30
GenBank Submission: KX795607
> BO27875.complete
GAAGTTATCAGTCGACATGCTAAAGGGTAGCACACTGAAAGCCCTGGACG
TCAGAATCCTATGGCCCCTTATTGAAACAAGTGGAGGACACCAGCGCAGC
TTCTCCAGCAGCACCCACCGGTCCTACATAACATTCAATGATTTCCGCAA
AAAACACCGCTGGTACACAAAAAAGGAGCTTGTGGGCTACTCCATGCAGG
ACATGTACAGCGTGGTTTCCGACGTCAGCAATTACCACAAGTTCGTGCCG
TATGTGAAGCGCTCCGATGTGCACAGCCGGGGAAGTGAGGGCTTCAAGGC
GGACCTCATTGTTGGCTTTCCGCCGCTTAACGAGGCCTACACCTCGCAGG
TGACCCTGGTGCCGCCCAGCTTGGTTAAGTCAGAGTGCCACGATGGACGT
CTGTTCAACTACCTCCTGAATGAGTGGTCTTTTAAGCCGGGCCTCAAGGA
CATACCTAACTCCTGCGTGCTGGACTTCAAGGTATCGTTCGAGTTCAAGT
CCCTCCTGCACAGCAACGTCGCCAACATATTTTTTGACCTTATCTGCGAT
CAAATGGAAAACGCTTTTATCCAGGAGGTCCGTCGACGGAGTGGTCCGCC
CTCAATCCGCTCCCACGTGCTTACTTCGGATCGGTCCGCAAGCTTTCTAG
ACCAT
BO27875.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:17:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9410-RA | 624 | CG9410-PA | 1..621 | 17..637 | 3105 | 100 | Plus |
CG9410-RB | 729 | CG9410-PB | 169..726 | 80..637 | 2790 | 100 | Plus |
CG9410-RE | 123 | CG9410-PE | 1..123 | 17..131 | 460 | 93.5 | Plus |
CG9410-RB | 729 | CG9410-PB | 1..65 | 17..81 | 325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:17:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9410-RA | 891 | CG9410-RA | 137..757 | 17..637 | 3105 | 100 | Plus |
CG9410-RE | 833 | CG9410-RE | 71..699 | 17..637 | 2990 | 98.7 | Plus |
CG9410-RB | 930 | CG9410-RB | 239..796 | 80..637 | 2790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:17:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6669491..6669942 | 186..637 | 2260 | 100 | Plus |
2R | 25286936 | 2R | 6669328..6669434 | 80..186 | 535 | 100 | Plus |
2R | 25286936 | 2R | 6669160..6669224 | 17..81 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:17:46 has no hits.
BO27875.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-30 16:20:33 Download gff for
BO27875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9410-RD | 583..647 | 17..81 | 100 | -> | Plus |
CG9410-RD | 753..1308 | 82..639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:01 Download gff for
BO27875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9410-RA | 137..757 | 17..639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:14:54 Download gff for
BO27875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9410-RA | 137..757 | 17..639 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:14:54 Download gff for
BO27875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6669492..6669942 | 187..639 | 99 | | Plus |
2R | 6669160..6669224 | 17..81 | 100 | -> | Plus |
2R | 6669330..6669434 | 82..186 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:01 Download gff for
BO27875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2556665..2556729 | 17..81 | 100 | -> | Plus |
arm_2R | 2556835..2556939 | 82..186 | 100 | -> | Plus |
arm_2R | 2556997..2557447 | 187..639 | 99 | | Plus |
BO27875.pep Sequence
Translation from 16 to 655
> BO27875.pep
MLKGSTLKALDVRILWPLIETSGGHQRSFSSSTHRSYITFNDFRKKHRWY
TKKELVGYSMQDMYSVVSDVSNYHKFVPYVKRSDVHSRGSEGFKADLIVG
FPPLNEAYTSQVTLVPPSLVKSECHDGRLFNYLLNEWSFKPGLKDIPNSC
VLDFKVSFEFKSLLHSNVANIFFDLICDQMENAFIQEVRRRSGPPSIRSH
VLTSDRSASFLDH
BO27875.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:34:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9410-PA | 207 | CG9410-PA | 1..207 | 1..207 | 1093 | 100 | Plus |
CG9410-PB | 242 | CG9410-PB | 1..242 | 1..207 | 1047 | 85.5 | Plus |