BO27935.complete Sequence
1126 bp assembled on 2011-06-21
GenBank Submission: KX798042
> BO27935.complete
GAAGTTATCAGTCGACATGACAATGTCGATGTATTCGACGACGGATAAAA
TGAAAATGTCAGCGCCCAGTTGTTTTCCAGGACGCTACAGTCCCTCCTAT
CGAAGTTCGGAGCAAATGCGTCGCTGCATGCCAAATCCATCTGGTGATAT
CTTCGCGGGCATCAACGATGGAATCCTCAGCAGAGCGGAGGCCCTGGCCG
CCGTCGACATCCAGAAGCACCAAGCCCAGCATGTACATAGCCAAATGCCC
TCCCAAATTAAGCACGACGTCATGTACCATCATCACTCCATGAGTGGGCC
TCCCCAGCGTCCGTTGCAGGAAAATCCTTTTTCTCGACAGATGCACCACT
CGATGGACCAACTGGACATGCTGGATCCGACGGGCTCGATGACCACACTG
GCGCCCATCTCGGAGTCGCCGCTAACGCCCACACACCAACACCTGCACGG
TTCCTATCACAGCATGAATCACATGATGAGCCACCACCATCCGGGCACGT
TAAGTGGCCATACGGGGGGACATCATGGACACTCGGCGGTACATCATCCT
GTTATCACGGCGGCAGTGGCTGCCGCTGGCCTGCATCCCGACACAGATAC
CGATCCTCGCGAGCTGGAGGCGTTTGCGGAGCGATTCAAGCAGCGGCGCA
TCAAGCTGGGTGTCACGCAGGCGGACGTGGGCAAAGCCCTGGCCAATCTC
AAGTTACCTGGCGTCGGAGCGCTGTCGCAGAGCACGATCTGTCGATTCGA
GAGCCTGACCCTGTCCCACAACAACATGATCGCCCTTAAGCCCATCCTGC
AGGCGTGGCTCGAGGAGGCCGAGGCGCAGGCGAAAAACAAGCGGCGCGAT
CCGGATGCGCCCAGTGTCCTGCCGGCGGGCGAAAAGAAAAGGACTTCCAT
TGCGGCACCTGAAAAGCGTTCTCTGGAAGCCTACTTCGCCGTCCAGCCGA
GGCCATCCGGTGAGAAAATCGCAGCGATTGCCGAAAAGCTGGATTTGAAG
AAAAACGTGGTGCGCGTCTGGTTCTGCAATCAACGTCAAAAACAAAAACG
TATAGTTAGTAGTGTAACACCATCAATGACTGGCCACGGTTCGGCGGGAT
TTGGATACGCAAGCTTTCTAGACCAT
BO27935.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:34:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| acj6-RF | 1095 | CG9151-PF | 1..1092 | 17..1108 | 5460 | 100 | Plus |
| acj6-RI | 1101 | CG9151-PI | 1..1098 | 17..1108 | 5365 | 99.5 | Plus |
| acj6-RH | 1074 | CG9151-PH | 1..1071 | 17..1108 | 5110 | 98.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:34:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| acj6-RF | 2594 | CG9151-RF | 750..1842 | 16..1108 | 5465 | 100 | Plus |
| acj6-RI | 4343 | CG9151-RI | 750..1848 | 16..1108 | 5370 | 99.5 | Plus |
| acj6-RH | 2573 | CG9151-RH | 750..1821 | 16..1108 | 5115 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:34:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15354226..15354459 | 892..659 | 1170 | 100 | Minus |
| X | 23542271 | X | 15354754..15354955 | 519..318 | 1010 | 100 | Minus |
| X | 23542271 | X | 15371511..15371688 | 320..143 | 890 | 100 | Minus |
| X | 23542271 | X | 15353221..15353387 | 1053..887 | 835 | 100 | Minus |
| X | 23542271 | X | 15354534..15354677 | 661..518 | 720 | 100 | Minus |
| X | 23542271 | X | 15378188..15378315 | 143..16 | 640 | 100 | Minus |
| X | 23542271 | X | 15353109..15353167 | 1108..1050 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:34:34 has no hits.
BO27935.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-21 17:13:28 Download gff for
BO27935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| acj6-RD | 141..264 | 17..140 | 100 | -- | Plus |
| acj6-RD | 354..1322 | 141..1110 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:54:53 Download gff for
BO27935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| acj6-RF | 141..1232 | 17..1110 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:02 Download gff for
BO27935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| acj6-RF | 751..1842 | 17..1110 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:02 Download gff for
BO27935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15378189..15378314 | 17..142 | 100 | | Minus |
| X | 15353225..15353382 | 892..1049 | 100 | <- | Minus |
| X | 15354227..15354458 | 660..891 | 100 | <- | Minus |
| X | 15354536..15354676 | 519..659 | 100 | <- | Minus |
| X | 15354755..15354953 | 320..518 | 100 | <- | Minus |
| X | 15371512..15371688 | 143..319 | 100 | <- | Minus |
| X | 15353106..15353167 | 1050..1110 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:54:53 Download gff for
BO27935.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15247139..15247200 | 1050..1110 | 96 | <- | Minus |
| arm_X | 15247258..15247415 | 892..1049 | 100 | <- | Minus |
| arm_X | 15248260..15248491 | 660..891 | 100 | <- | Minus |
| arm_X | 15248569..15248709 | 519..659 | 100 | <- | Minus |
| arm_X | 15248788..15248986 | 320..518 | 100 | <- | Minus |
| arm_X | 15265545..15265721 | 143..319 | 100 | <- | Minus |
| arm_X | 15272222..15272347 | 17..142 | 100 | | Minus |
BO27935.pep Sequence
Translation from 16 to 1126
> BO27935.pep
MTMSMYSTTDKMKMSAPSCFPGRYSPSYRSSEQMRRCMPNPSGDIFAGIN
DGILSRAEALAAVDIQKHQAQHVHSQMPSQIKHDVMYHHHSMSGPPQRPL
QENPFSRQMHHSMDQLDMLDPTGSMTTLAPISESPLTPTHQHLHGSYHSM
NHMMSHHHPGTLSGHTGGHHGHSAVHHPVITAAVAAAGLHPDTDTDPREL
EAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLS
HNNMIALKPILQAWLEEAEAQAKNKRRDPDAPSVLPAGEKKRTSIAAPEK
RSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRIVSSV
TPSMTGHGSAGFGYASFLDH
BO27935.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:34:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| acj6-PF | 364 | CG9151-PF | 1..364 | 1..364 | 1924 | 100 | Plus |
| acj6-PI | 366 | CG9151-PI | 1..366 | 1..364 | 1911 | 99.5 | Plus |
| acj6-PE | 375 | CG9151-PE | 1..375 | 1..364 | 1902 | 97.1 | Plus |
| acj6-PM | 383 | CG9151-PM | 1..383 | 1..364 | 1894 | 95 | Plus |
| acj6-PH | 357 | CG9151-PH | 1..357 | 1..364 | 1868 | 98.1 | Plus |
