BO27937.complete Sequence
1621 bp assembled on 2011-06-17
GenBank Submission: KX797092
> BO27937.complete
GAAGTTATCAGTCGACATGAGTGACAGTTCCAGCTCCAATTGCTCGAAGG
ATCGTGCTAAGCCGGTGGAAACGCTGGTTTTGGCAAACTATGCCCTGAAA
GCCGAGCAGAAGAAGGCCCAAGGACAGGGTGGTCGAAAGGAGGACGAGCG
CATCACCACTGCGGTTATGAAGGTCCTCGAGGGCTACGACTGGAATCTAG
TCCAGGCATCAGCCAAGGCGCCCACGGACCGCAAAAAGGAGCACATCAAG
CGACCGATGAACGCCTTCATGGTTTGGGCCCAGGCAGCCCGCAGGGTCAT
GTCCAAACAGTATCCGCATCTGCAGAACTCCGAACTGAGCAAATCGCTGG
GCAAGCTGTGGAAAAATCTAAAGGACAGTGATAAGAAGCCCTTCATGGAA
TTCGCCGAGAAGCTTCGAATGACCCACAAGCAGGAGCATCCGGACTACAA
GTACCAGCCGCGGCGCAAGAAAGCGCGGGTGTTGCCGTCCCAGCAAAGCG
GTGAAGGGGGATCCCCGGGTCCAGAGATGACGTTATCCGCCACTATGGGT
AGCTCCGGGAAGCCAAGGAGCAGCAATTCCAATGGCCAGAGGCGAGCGGG
CAAGGGAAATGCAGCTGCTGATCTGGGCAGCTGCGCCTCGACCATCTCCC
ATGCCAATGTGGGCTCGAACTCCTCGGATGTCTTCAGTAATGAGGCCTTC
ATGAAATCCCTGAACAGTGCCTGTGCGGCCAGTTTGATGGAGCAGAGCCT
CATCGAAACTGGCCTGGACTCTCCGTGCTCCACGGCCAGTTCAATGTCCT
CGCTGACGCCCCCAGCCACGCCCTACAATGTAGCCCCATCCAATGCAAAA
GCGTCGGCAGCAAATAACCCCAGTCTTTTGCTAAGGCAACTAAGTGAGCC
AGTTGCAAATGCAGGCGATGGTTATGGAGTTCTCCTCGAGGCAGGCAGAG
AATATGTGGCCATAGGTGAGGTCAATTATCAGGGGCAATCGGCGGGAGTT
CAGAGTGGAGCCGAAGGAGGAGGAGCAGGTCAGGAGATGGACTTCCTGGA
GAACATCAATGGGTATGGTGGCTACACGGGCAGTCGGGTGAGCTACCCTG
CCTACTCCTACCCCGCAAACGGAGGCCACTTCGCCACCGAGGAGCAGCAG
CAGCAGCAGGCGTTACAGGCCAGTGAAGCCTTAAATTACAAGCCAGCAGC
CGCCGACATCGATCCCAAGGAAATTGACCAGTATTTCATGGATCAAATGC
TGCCCATGACGCAGCACCACCATCCGCATCACACCCACCCGCTGCACCAC
CCACTGCACCACTCGCCGCCTTTGAACTCCTCCGCCTCGCTATCCTCGGC
CTGCTCCAGTGCCAGCTCGCAGCAGCCGGTAGCGGAGTACTACGAGCACT
TGGGCTACTCCCCGGCCGCCTCCTCTGCCAGCCAGAATCCCAACTTCGGG
CCCCAGCAACCGTATGCCAACGGGGCGGCCTCCATGACACCCACACTGGG
TGACCCCGCACCGCAACAGGAGCTGCAGTCGCAGCAGCAGGAGCAGCAGC
ACCAGAATCCATCGCAGCATCATCTGTGGGGCACTTACACTTATGTCAAT
CCCGCAAGCTTTCTAGACCAT
BO27937.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:03:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sox100B-RA | 1590 | CG15552-PA | 1..1587 | 17..1603 | 7935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:03:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sox100B-RA | 2049 | CG15552-RA | 187..1773 | 17..1603 | 7935 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:03:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31081892..31083131 | 364..1603 | 6200 | 100 | Plus |
| 3R | 32079331 | 3R | 31065439..31065639 | 17..217 | 1005 | 100 | Plus |
| 3R | 32079331 | 3R | 31073212..31073362 | 213..363 | 740 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:03:33 has no hits.
BO27937.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:53:08 Download gff for
BO27937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox100B-RA | 83..1669 | 17..1605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:27 Download gff for
BO27937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox100B-RA | 187..1773 | 17..1605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:36 Download gff for
BO27937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox100B-RA | 187..1773 | 17..1605 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:36 Download gff for
BO27937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31065439..31065638 | 17..216 | 100 | -> | Plus |
| 3R | 31073216..31073362 | 217..363 | 100 | -> | Plus |
| 3R | 31081892..31083131 | 364..1605 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:27 Download gff for
BO27937.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26891161..26891360 | 17..216 | 100 | -> | Plus |
| arm_3R | 26898938..26899084 | 217..363 | 100 | -> | Plus |
| arm_3R | 26907614..26908853 | 364..1605 | 99 | | Plus |
BO27937.pep Sequence
Translation from 16 to 1621
> BO27937.pep
MSDSSSSNCSKDRAKPVETLVLANYALKAEQKKAQGQGGRKEDERITTAV
MKVLEGYDWNLVQASAKAPTDRKKEHIKRPMNAFMVWAQAARRVMSKQYP
HLQNSELSKSLGKLWKNLKDSDKKPFMEFAEKLRMTHKQEHPDYKYQPRR
KKARVLPSQQSGEGGSPGPEMTLSATMGSSGKPRSSNSNGQRRAGKGNAA
ADLGSCASTISHANVGSNSSDVFSNEAFMKSLNSACAASLMEQSLIETGL
DSPCSTASSMSSLTPPATPYNVAPSNAKASAANNPSLLLRQLSEPVANAG
DGYGVLLEAGREYVAIGEVNYQGQSAGVQSGAEGGGAGQEMDFLENINGY
GGYTGSRVSYPAYSYPANGGHFATEEQQQQQALQASEALNYKPAAADIDP
KEIDQYFMDQMLPMTQHHHPHHTHPLHHPLHHSPPLNSSASLSSACSSAS
SQQPVAEYYEHLGYSPAASSASQNPNFGPQQPYANGAASMTPTLGDPAPQ
QELQSQQQEQQHQNPSQHHLWGTYTYVNPASFLDH
BO27937.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:27:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sox100B-PA | 529 | CG15552-PA | 1..529 | 1..529 | 2776 | 100 | Plus |
| SoxN-PB | 761 | CG18024-PB | 132..615 | 30..514 | 355 | 25.8 | Plus |
| SoxN-PA | 572 | CG18024-PA | 132..314 | 30..201 | 309 | 36.4 | Plus |
| Sox21a-PA | 388 | CG7345-PA | 119..212 | 75..168 | 267 | 52.1 | Plus |
| Sox21a-PB | 407 | CG7345-PB | 119..212 | 75..168 | 267 | 52.1 | Plus |
