BO27938.complete Sequence
1795 bp assembled on 2011-07-18
GenBank Submission: KX798846
> BO27938.complete
GAAGTTATCAGTCGACATGCTGCAGCGCAGTTACGACCTTTCGCCCTCGC
CGGCGCGTACTTCACCCACCAATGGAGTCCAGAACTTGGGAGCTGGGGCA
CAGTTGCCACCGGCTCAAGTCACTGACTTTAGCATCAGTAAGATTCTGGG
CAAGGAGCGTAAATCCGCTCAGGATACGAGCACGAATATCCTGGATCTAT
CCAAGAGCAGTAGCAACAGTATTAGGAGCCCACAGGCTCTTGGAGGGCTG
GCAATACCATCAACTCCTTATGCCTCCGGTGCCTACTCCATGTTGCCGCC
AGATTTGGTGGCCATGGCCAATGCCACCAAGTTCTATGCCCAATTCTTCC
CGCACTTACTGCCCGCCTATGCGGCTGCTGCAGCGGCTGCCGGCTTGAGT
ACTCCTCCTACGTCGCCCTATCAAACACATCAGCATCAGCAGCATTTGCC
AAATCAGCAGAAACGCTTCTTTGCTCCCTATGTGATCAATGGATCGGTTC
CCCCACCACCACCACTGCAGCAGCAACAGCAACCTCTCATACGCACCAAA
AGCACCGCATGCACTCGTCCGGATTGCCCGGAGTGCCTGGATTATTACCA
AAGATTGCAGACTGGTGGCTATAAGCAGACCGCACCTCTCATCTCACCCG
CCGCCTCCTCGGTGAGCAGTTCCACCGGATCAATACGTCCTGTGAGGGAT
CTGATTATGAGTGCCACTGGAGGAGCCGCCAGCACTAACATCTCACTGAC
CACCGTGACCAATCTGAGTCTGAACTCGGTCCAGGCAACGGCCGTCGGAA
TGATGCCCAAGATGACCGGTGGACTGATCACCACAGCCGTCGGCAGCAAC
AGTGGAGCAATCGGTGGTATCGGTGGATACAATGCCACATCCGCCGAGGA
GATCAGCTACAAGTGCCGGATTTGCGAGAAGGTATTCGGATGCTCTGAAA
CTCTGCAGGCTCATGAAAAGACGCACAAATCGCCGCGTTACGAGTGTGCG
GATTGTGGAAAGGGTTTCTCCCAGCTGCGAAATTACAAATATCACCTGTC
CGTTCACCGAGGAACCAAGGAGTTTGCCGCCGAGTGTCCCGAATGTGGCA
AGACATTCAACGATAAGGGATATTTGAGCAGTCACCTAAAGATTCACCGG
AACCGGAAGGAGTACGAGTGTCCTTACTGTCCCAAATCGTTCAATCAGCG
TGTGGCCTTCAATATGCATGTCCGGATTCATACCGGCGTGAAACCCCACA
AATGCAACGAGTGCGGAAAGAGATTTTCGCGTAAAATGCTGCTCAAACAG
CACATGAGGACGCACAGTGGTGAGAAACCGTATCAGTGCTCCGTGTGCGG
CAAGTCCTTTGCCGATCGCAGCAACATGACCCTGCACCATCGCCTCCACT
CGGGAATCAAGCCCTTCAGCTGCCCCCTGTGCCCCAAAGCCTTCACCAAA
AAGCATCACCTAAAGACGCATCTGAATTACCATACAGGCTGCAAGCCGTA
TGTCTGCCCACATCCCAACTGCAATCAGGCATTCACCCAGTCGAGCAATA
TGCGAACCCACGCTAAGAAGTGTCAGTACCGTCCGTTGGATGGACTCACG
GTCACATCATCCGCACTTCCAGTACCGGGAAAACAACAAACAGGTCCACC
GCCCACTTTGGCCATGGCCATGGCTCAAACATTTCAAATGCCGCCACCTC
CTGGAGTTCTAACACCTGGATCTGGTCCATCCCAACCGCCGAGTCAGCAA
ACCCTTCTCAGCAATCTCAGGACATTCGCAAGCTTTCTAGACCAT
BO27938.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:35:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15269-RA | 1764 | CG15269-PA | 1..1761 | 17..1777 | 8805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:35:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15269-RA | 2122 | CG15269-RA | 180..1941 | 16..1777 | 8810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:35:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15109584..15110527 | 16..959 | 4720 | 100 | Plus |
| 2L | 23513712 | 2L | 15112090..15112911 | 956..1777 | 4110 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:35:18 has no hits.
BO27938.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-18 15:33:38 Download gff for
BO27938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15269-RA | 1..1761 | 17..1779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:30:59 Download gff for
BO27938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15269-RA | 181..1941 | 17..1779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:37:13 Download gff for
BO27938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15269-RA | 181..1941 | 17..1779 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:37:13 Download gff for
BO27938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15109585..15110526 | 17..958 | 100 | -> | Plus |
| 2L | 15112093..15112911 | 959..1779 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:30:59 Download gff for
BO27938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15109585..15110526 | 17..958 | 100 | -> | Plus |
| arm_2L | 15112093..15112911 | 959..1779 | 99 | | Plus |
BO27938.pep Sequence
Translation from 16 to 1795
> BO27938.pep
MLQRSYDLSPSPARTSPTNGVQNLGAGAQLPPAQVTDFSISKILGKERKS
AQDTSTNILDLSKSSSNSIRSPQALGGLAIPSTPYASGAYSMLPPDLVAM
ANATKFYAQFFPHLLPAYAAAAAAAGLSTPPTSPYQTHQHQQHLPNQQKR
FFAPYVINGSVPPPPPLQQQQQPLIRTKSTACTRPDCPECLDYYQRLQTG
GYKQTAPLISPAASSVSSSTGSIRPVRDLIMSATGGAASTNISLTTVTNL
SLNSVQATAVGMMPKMTGGLITTAVGSNSGAIGGIGGYNATSAEEISYKC
RICEKVFGCSETLQAHEKTHKSPRYECADCGKGFSQLRNYKYHLSVHRGT
KEFAAECPECGKTFNDKGYLSSHLKIHRNRKEYECPYCPKSFNQRVAFNM
HVRIHTGVKPHKCNECGKRFSRKMLLKQHMRTHSGEKPYQCSVCGKSFAD
RSNMTLHHRLHSGIKPFSCPLCPKAFTKKHHLKTHLNYHTGCKPYVCPHP
NCNQAFTQSSNMRTHAKKCQYRPLDGLTVTSSALPVPGKQQTGPPPTLAM
AMAQTFQMPPPPGVLTPGSGPSQPPSQQTLLSNLRTFASFLDH
BO27938.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:57:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15269-PA | 587 | CG15269-PA | 1..587 | 1..587 | 3153 | 100 | Plus |
| crol-PC | 756 | CG14938-PC | 85..429 | 200..519 | 483 | 30.7 | Plus |
| crol-PH | 686 | CG14938-PH | 85..430 | 200..519 | 476 | 30.4 | Plus |
| crol-PG | 878 | CG14938-PG | 86..466 | 159..518 | 476 | 29.7 | Plus |
| Meics-PB | 571 | CG8474-PB | 262..474 | 300..515 | 459 | 37.8 | Plus |
| crol-PG | 878 | CG14938-PG | 330..551 | 295..519 | 439 | 35.8 | Plus |
| crol-PC | 756 | CG14938-PC | 292..516 | 295..517 | 421 | 36.1 | Plus |
| crol-PG | 878 | CG14938-PG | 414..638 | 295..517 | 421 | 36.1 | Plus |
| crol-PH | 686 | CG14938-PH | 265..471 | 295..497 | 371 | 35.9 | Plus |
| crol-PH | 686 | CG14938-PH | 293..488 | 295..484 | 349 | 36.2 | Plus |
| crol-PC | 756 | CG14938-PC | 320..518 | 295..461 | 255 | 29.9 | Plus |
| crol-PG | 878 | CG14938-PG | 442..640 | 295..461 | 255 | 29.9 | Plus |
