BO27939.complete Sequence
952 bp assembled on 2011-06-17
GenBank Submission: KX798021
> BO27939.complete
GAAGTTATCAGTCGACATGCACATTTCTGCTGAGGTCAGTTCGACCACCT
CAAATCAAATACAGCAACAGCAGCAGCAACATCAGCAGCAGCAGCAACAT
CAGTTGTTGCAGCACCAGCAACAACAGACAGCAACAACGACCACAACGAA
GCGGCGGAATGCTGAGTCCTCTGCCAGCAGCAATAACAACAACAACAACA
ATACCAGCACCACCAACAATAATAATACTAACAATAACAACAACAGCACC
ACGAACAACAACAACAACAACAATAATAATAATGTTAAAACAAAGCCCGT
GGACACGAGTCCCTACTTAACCCCCGAGAATCTCATCGAGCGCACCGTCG
ACGTCCTGCTCGCCGAACATCCTGGCGAGCTGGTCAAGACGGGATCTCCA
CATGTGGTCTGCACCACATTGCCCACGCACTGGCGCTCAAACAAAACTCT
ACCGATCGCCTTCAAGGTTTTGGCACTGGGCGAGGTCATGGATGGCACTA
TAGTCACCATTCGAGCCGGAAACGATGAGAACTTCTGCGGGGAACTGAGA
AACTGCACGGCCGTGATGAAAAATCAGGTGGCCAAGTTCAATGATCTGCG
GTTCGTGGGCAGAAGCGGAAGGGGCAAGAGCTTCACACTGACGATTGTCA
TCTCAACGAACCCCATCCAGATAGCCACCTACACCAAGGCCATCAAGGTG
ACCGTGGATGGGCCGAGGGAACCAAGATCGAAGGTGCGACACCAGGGATT
CCATCCGTTCGCCTTTGGGCCGCAACGTTTCGGACCGGATCCACTTATGG
CCGGATTGCCCTTCAAGTTGCCAGGTAAGCGGAAAAGGTGGAGGAGATTC
CGGGGGAATCAGGGATTCGGAAGGCTTAAGCGCAAACATCGCCGCCACAC
TGAGAGAAATTCGGGCTATTCGATTAGTCTAAAAGCAAGCTTTCTAGACC
AT
BO27939.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:03:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RunxB-RC | 1992 | CG42267-PC | 1..809 | 17..825 | 4045 | 100 | Plus |
| RunxA-RD | 1992 | CG34145-PD | 355..629 | 440..714 | 460 | 77.8 | Plus |
| RunxA-RC | 1956 | CG34145-PC | 355..629 | 440..714 | 460 | 77.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:03:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RunxB-RC | 3355 | CG42267-RC | 280..1088 | 17..825 | 4045 | 100 | Plus |
| RunxA-RD | 4831 | CG34145-RD | 1320..1594 | 440..714 | 460 | 77.8 | Plus |
| RunxA-RC | 4831 | CG34145-RC | 1320..1594 | 440..714 | 460 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:03:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20540881..20541272 | 17..408 | 1960 | 100 | Plus |
| X | 23542271 | X | 20553569..20553880 | 623..934 | 1560 | 100 | Plus |
| X | 23542271 | X | 20541827..20542045 | 406..624 | 1095 | 100 | Plus |
| X | 23542271 | X | 9288368..9288569 | 420..621 | 335 | 77.7 | Plus |
| X | 23542271 | X | 20604115..20604281 | 606..440 | 325 | 79.6 | Minus |
| X | 23542271 | X | 20695181..20695391 | 517..727 | 320 | 76.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:03:55 has no hits.
BO27939.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:53:09 Download gff for
BO27939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RunxB-RB | 17..930 | 17..930 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:36 Download gff for
BO27939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RunxB-RC | 112..925 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:44 Download gff for
BO27939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RunxB-RC | 280..1093 | 17..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:44 Download gff for
BO27939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20540881..20541270 | 17..406 | 100 | -> | Plus |
| X | 20541828..20542044 | 407..623 | 100 | -> | Plus |
| X | 20553570..20553876 | 624..930 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:36 Download gff for
BO27939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20411908..20412297 | 17..406 | 100 | -> | Plus |
| arm_X | 20412855..20413071 | 407..623 | 100 | -> | Plus |
| arm_X | 20424597..20424903 | 624..930 | 100 | | Plus |
BO27939.pep Sequence
Translation from 16 to 952
> BO27939.pep
MHISAEVSSTTSNQIQQQQQQHQQQQQHQLLQHQQQQTATTTTTKRRNAE
SSASSNNNNNNNTSTTNNNNTNNNNNSTTNNNNNNNNNNVKTKPVDTSPY
LTPENLIERTVDVLLAEHPGELVKTGSPHVVCTTLPTHWRSNKTLPIAFK
VLALGEVMDGTIVTIRAGNDENFCGELRNCTAVMKNQVAKFNDLRFVGRS
GRGKSFTLTIVISTNPIQIATYTKAIKVTVDGPREPRSKVRHQGFHPFAF
GPQRFGPDPLMAGLPFKLPGKRKRWRRFRGNQGFGRLKRKHRRHTERNSG
YSISLKASFLDH
BO27939.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:27:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RunxB-PC | 663 | CG42267-PC | 1..270 | 1..270 | 1422 | 100 | Plus |
| RunxA-PB | 646 | CG34145-PB | 4..245 | 42..269 | 737 | 61.4 | Plus |
| RunxA-PC | 651 | CG34145-PC | 4..250 | 42..269 | 724 | 60.3 | Plus |
| RunxA-PD | 663 | CG34145-PD | 4..250 | 42..269 | 724 | 60.3 | Plus |
| run-PC | 510 | CG1849-PC | 38..253 | 34..257 | 582 | 50.9 | Plus |
