BO27940.complete Sequence
340 bp assembled on 2011-06-17
GenBank Submission: KX797577
> BO27940.complete
GAAGTTATCAGTCGACATGAAATCCATCCTTGTGCTCGCCTGCCTTTTAA
GTGCCCTGTGCCTAGCTGCTGCCGCTCCGGATGCAGAGATTGTTGACCTG
GTGTCCGATGTCAATGCCGATAGCTATAGCTACAAATTTGAGACAAGCGA
TGGCACCAAGCAGGAGCAGCACGGCTCCCTGAAGAGCCTTGGTCCCGAGG
AGGATGCCTTGCAGGTGGCCGGATCCTTCAGCTTCGTAGGAGACGACGGA
CAGACGCATGCCATCAGCTACGTGGCCGATGAGAACGGATTCCAACCCCA
GGGCGAGGATATTCCCCACCTAGCAAGCTTTCTAGACCAT
BO27940.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:04:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp65Aa-RA | 309 | CG7287-PA | 1..306 | 17..322 | 1530 | 100 | Plus |
Cpr65Ax1-RA | 309 | CG34270-PA | 195..278 | 220..303 | 180 | 81 | Plus |
Cpr65Ax2-RB | 309 | CG18777-PB | 195..278 | 220..303 | 180 | 81 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:04:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp65Aa-RA | 500 | CG7287-RA | 30..335 | 17..322 | 1530 | 100 | Plus |
Cpr65Ax1-RA | 389 | CG34270-RA | 243..326 | 220..303 | 180 | 81 | Plus |
Cpr65Ax2-RB | 732 | CG18777-RB | 242..325 | 220..303 | 180 | 81 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:03:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6151333..6151638 | 17..322 | 1530 | 100 | Plus |
3L | 28110227 | 3L | 6148353..6148609 | 45..301 | 1150 | 96.5 | Plus |
3L | 28110227 | 3L | 6147594..6147677 | 303..220 | 180 | 81 | Minus |
3L | 28110227 | 3L | 6150465..6150548 | 303..220 | 180 | 81 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:03:59 has no hits.
BO27940.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:53:09 Download gff for
BO27940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Aa-RA | 30..335 | 17..324 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:38 Download gff for
BO27940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Aa-RA | 30..335 | 17..324 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:47 Download gff for
BO27940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Aa-RA | 30..335 | 17..324 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:47 Download gff for
BO27940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6151333..6151638 | 17..324 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:38 Download gff for
BO27940.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6144433..6144738 | 17..324 | 99 | | Plus |
BO27940.pep Sequence
Translation from 16 to 340
> BO27940.pep
MKSILVLACLLSALCLAAAAPDAEIVDLVSDVNADSYSYKFETSDGTKQE
QHGSLKSLGPEEDALQVAGSFSFVGDDGQTHAISYVADENGFQPQGEDIP
HLASFLDH
BO27940.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:27:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lcp65Aa-PA | 102 | CG7287-PA | 1..102 | 1..102 | 520 | 100 | Plus |
Lcp65Ac-PA | 109 | CG6956-PA | 4..105 | 3..102 | 268 | 49 | Plus |
Cpr65Ax1-PA | 102 | CG34270-PA | 1..97 | 1..100 | 251 | 51 | Plus |
Cpr65Ax2-PB | 102 | CG18777-PB | 1..97 | 1..100 | 251 | 51 | Plus |
Cpr65Ax2-PA | 102 | CG18777-PA | 1..97 | 1..100 | 251 | 51 | Plus |