Clone BO27940 Report

Search the DGRC for BO27940

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:279
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptLcp65Aa-RA
Protein status:BO27940.pep: Imported from assembly
Sequenced Size:340

Clone Sequence Records

BO27940.complete Sequence

340 bp assembled on 2011-06-17

GenBank Submission: KX797577

> BO27940.complete
GAAGTTATCAGTCGACATGAAATCCATCCTTGTGCTCGCCTGCCTTTTAA
GTGCCCTGTGCCTAGCTGCTGCCGCTCCGGATGCAGAGATTGTTGACCTG
GTGTCCGATGTCAATGCCGATAGCTATAGCTACAAATTTGAGACAAGCGA
TGGCACCAAGCAGGAGCAGCACGGCTCCCTGAAGAGCCTTGGTCCCGAGG
AGGATGCCTTGCAGGTGGCCGGATCCTTCAGCTTCGTAGGAGACGACGGA
CAGACGCATGCCATCAGCTACGTGGCCGATGAGAACGGATTCCAACCCCA
GGGCGAGGATATTCCCCACCTAGCAAGCTTTCTAGACCAT

BO27940.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Aa-RA 309 CG7287-PA 1..306 17..322 1530 100 Plus
Cpr65Ax1-RA 309 CG34270-PA 195..278 220..303 180 81 Plus
Cpr65Ax2-RB 309 CG18777-PB 195..278 220..303 180 81 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:04:02
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Aa-RA 500 CG7287-RA 30..335 17..322 1530 100 Plus
Cpr65Ax1-RA 389 CG34270-RA 243..326 220..303 180 81 Plus
Cpr65Ax2-RB 732 CG18777-RB 242..325 220..303 180 81 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:03:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6151333..6151638 17..322 1530 100 Plus
3L 28110227 3L 6148353..6148609 45..301 1150 96.5 Plus
3L 28110227 3L 6147594..6147677 303..220 180 81 Minus
3L 28110227 3L 6150465..6150548 303..220 180 81 Minus
Blast to na_te.dros performed on 2014-11-26 15:03:59 has no hits.

BO27940.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:53:09 Download gff for BO27940.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Aa-RA 30..335 17..324 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:47:38 Download gff for BO27940.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Aa-RA 30..335 17..324 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:47 Download gff for BO27940.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Aa-RA 30..335 17..324 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:47 Download gff for BO27940.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6151333..6151638 17..324 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:47:38 Download gff for BO27940.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6144433..6144738 17..324 99   Plus

BO27940.pep Sequence

Translation from 16 to 340

> BO27940.pep
MKSILVLACLLSALCLAAAAPDAEIVDLVSDVNADSYSYKFETSDGTKQE
QHGSLKSLGPEEDALQVAGSFSFVGDDGQTHAISYVADENGFQPQGEDIP
HLASFLDH

BO27940.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
Lcp65Aa-PA 102 CG7287-PA 1..102 1..102 520 100 Plus
Lcp65Ac-PA 109 CG6956-PA 4..105 3..102 268 49 Plus
Cpr65Ax1-PA 102 CG34270-PA 1..97 1..100 251 51 Plus
Cpr65Ax2-PB 102 CG18777-PB 1..97 1..100 251 51 Plus
Cpr65Ax2-PA 102 CG18777-PA 1..97 1..100 251 51 Plus