Clone BO27949 Report

Search the DGRC for BO27949

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:279
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptHP1e-RA
Protein status:BO27949.pep: Imported from assembly
Sequenced Size:556

Clone Sequence Records

BO27949.complete Sequence

556 bp assembled on 2011-06-17

GenBank Submission: KX800105

> BO27949.complete
GAAGTTATCAGTCGACATGGATTCAGATGCCGATGGTGGCGAGACCGTTT
CGAATTTCTCTGAAAATTCGACGGATTTTGAAGAAACTGAGGAGTATATT
GTAGAGAGGATTTTGGATCGAAGGCATTATATGGGCCAATTACAATACTT
GGTCAAATGGCTGGATTATAGCGATGAAGATAATACCTGGGAATCGGCAG
CAGATCTCGATTGCCATTCACTTATTGATTCGATTGAATCACAAAAAAGT
CTGAAGAGGGGTCAAGAGCTGAATAATCAATATGAAACTAAAGCTAAACG
ACTGAAAATCGATCCATGTCTAGTAGTAGATAGTCCTTTTAATCATGGTT
TCACTGCACAAGAGATTCTAAAAGGCGCTAAAAACAATGGTGAAATATCG
TTTTTAATTAGGTTTTGGCATCTCGATCAACCACAAGTGGTGCCAAGTGG
AATTGCATATGTGGAAATACCGCAGATGGTTCTGAAATTCTATGAAAATC
ATTGCAATTTTCACGATTATTTAAATAATTATATATCAGCAAGCTTTCTA
GACCAT

BO27949.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
HP1e-RA 525 CG8120-PA 1..522 17..538 2610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
HP1e-RA 592 CG8120-RA 57..578 17..538 2610 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9321826..9322347 17..538 2610 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:49:06 has no hits.

BO27949.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:52:31 Download gff for BO27949.complete
Subject Subject Range Query Range Percent Splice Strand
HP1e-RA 57..578 17..540 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:19 Download gff for BO27949.complete
Subject Subject Range Query Range Percent Splice Strand
HP1e-RA 57..578 17..540 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:48 Download gff for BO27949.complete
Subject Subject Range Query Range Percent Splice Strand
HP1e-RA 57..578 17..540 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:48 Download gff for BO27949.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9321826..9322347 17..540 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:19 Download gff for BO27949.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5147548..5148069 17..540 99   Plus

BO27949.pep Sequence

Translation from 16 to 556

> BO27949.pep
MDSDADGGETVSNFSENSTDFEETEEYIVERILDRRHYMGQLQYLVKWLD
YSDEDNTWESAADLDCHSLIDSIESQKSLKRGQELNNQYETKAKRLKIDP
CLVVDSPFNHGFTAQEILKGAKNNGEISFLIRFWHLDQPQVVPSGIAYVE
IPQMVLKFYENHCNFHDYLNNYISASFLDH

BO27949.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:27:39
Subject Length Description Subject Range Query Range Score Percent Strand
HP1e-PA 174 CG8120-PA 1..174 1..174 933 100 Plus
Su(var)205-PB 206 CG8409-PB 19..201 22..166 239 31.1 Plus
Su(var)205-PA 206 CG8409-PA 19..201 22..166 239 31.1 Plus
HP1b-PB 240 CG7041-PB 3..153 26..166 198 32.9 Plus
HP1b-PC 240 CG7041-PC 3..153 26..166 198 32.9 Plus