BO27949.complete Sequence
556 bp assembled on 2011-06-17
GenBank Submission: KX800105
> BO27949.complete
GAAGTTATCAGTCGACATGGATTCAGATGCCGATGGTGGCGAGACCGTTT
CGAATTTCTCTGAAAATTCGACGGATTTTGAAGAAACTGAGGAGTATATT
GTAGAGAGGATTTTGGATCGAAGGCATTATATGGGCCAATTACAATACTT
GGTCAAATGGCTGGATTATAGCGATGAAGATAATACCTGGGAATCGGCAG
CAGATCTCGATTGCCATTCACTTATTGATTCGATTGAATCACAAAAAAGT
CTGAAGAGGGGTCAAGAGCTGAATAATCAATATGAAACTAAAGCTAAACG
ACTGAAAATCGATCCATGTCTAGTAGTAGATAGTCCTTTTAATCATGGTT
TCACTGCACAAGAGATTCTAAAAGGCGCTAAAAACAATGGTGAAATATCG
TTTTTAATTAGGTTTTGGCATCTCGATCAACCACAAGTGGTGCCAAGTGG
AATTGCATATGTGGAAATACCGCAGATGGTTCTGAAATTCTATGAAAATC
ATTGCAATTTTCACGATTATTTAAATAATTATATATCAGCAAGCTTTCTA
GACCAT
BO27949.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:49:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP1e-RA | 525 | CG8120-PA | 1..522 | 17..538 | 2610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:49:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP1e-RA | 592 | CG8120-RA | 57..578 | 17..538 | 2610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:49:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9321826..9322347 | 17..538 | 2610 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:49:06 has no hits.
BO27949.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:52:31 Download gff for
BO27949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP1e-RA | 57..578 | 17..540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:19 Download gff for
BO27949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP1e-RA | 57..578 | 17..540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:48 Download gff for
BO27949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP1e-RA | 57..578 | 17..540 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:48 Download gff for
BO27949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9321826..9322347 | 17..540 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:19 Download gff for
BO27949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5147548..5148069 | 17..540 | 99 | | Plus |
BO27949.pep Sequence
Translation from 16 to 556
> BO27949.pep
MDSDADGGETVSNFSENSTDFEETEEYIVERILDRRHYMGQLQYLVKWLD
YSDEDNTWESAADLDCHSLIDSIESQKSLKRGQELNNQYETKAKRLKIDP
CLVVDSPFNHGFTAQEILKGAKNNGEISFLIRFWHLDQPQVVPSGIAYVE
IPQMVLKFYENHCNFHDYLNNYISASFLDH
BO27949.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:27:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP1e-PA | 174 | CG8120-PA | 1..174 | 1..174 | 933 | 100 | Plus |
Su(var)205-PB | 206 | CG8409-PB | 19..201 | 22..166 | 239 | 31.1 | Plus |
Su(var)205-PA | 206 | CG8409-PA | 19..201 | 22..166 | 239 | 31.1 | Plus |
HP1b-PB | 240 | CG7041-PB | 3..153 | 26..166 | 198 | 32.9 | Plus |
HP1b-PC | 240 | CG7041-PC | 3..153 | 26..166 | 198 | 32.9 | Plus |