Clone BO27952 Report

Search the DGRC for BO27952

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:279
Well:52
Vector:pDNR-Dual
Associated Gene/Transcriptyellow-k-RA
Protein status:BO27952.pep: Imported from assembly
Sequenced Size:1060

Clone Sequence Records

BO27952.complete Sequence

1060 bp assembled on 2011-06-17

GenBank Submission: KX796120

> BO27952.complete
GAAGTTATCAGTCGACATGGTCACACATGGTGTCCTCGGCTTGGGATTTC
TCATTGTTGGTCTAATTCTGGCCACGGACGCCTGGCTGTTATCCGAATCT
GGTTTAAACGAATCCAGCTACAAAGTCCGTCATCTATCGATGCACTTTTC
GCGAGTGTTTCTCAGCGTAAATGTAGAAAGCAACGATGCGCCCACTTTGA
TCGAGGCGCAATGGCCGGTTTCCTATTTTCCCATGCCCACTGTCGTCTTT
CCCCACATCGATGTTCATTCCATGGGGGATCATGATGATTGCTCTCTGGT
ACAACAGGCACACTGGTCCCAGGTGGATGCACTGAGTCGACTGTGGGTCA
TGGACATCGGATTTCCCGGCAGCACGTGCTCACCCCGTTTGTTTGTCTTC
GATCTGATGCGTAACAACGCGGAGCTATTGAGAATCGATTGTGGACACCA
TATAGGTGCTAATGACACCCACTTTCTGACTGTCCAAATGGGACCCAAGA
GTCCGGGATGCGAGCACGAGCGCCATATTTACTTCATCCTTGGAAAGGTA
CCAGAAATTCTAGCCTACGACATCCTGGAGCAGACGTGGCACCGCCTATC
CTTGGAGAGCAATAAGTACGAGAATATGAATCAATCGTTTCCCATCAAGC
CAGTGGATTTCATCTTCGGAATTCAAGGGGAACTCATACTCTCCGACCAG
GATGGTGATCTATACAGTACGGTGGACAGACTGGAAATTGAAGGCAAAAG
CGAATTAGCAAGCAAACCAATTAACAATAGCATTAAACTCACACATTTGG
GCAGTCTTCTGGGCAGCAGTCGCAGCATGATCATCGACAATTTCGGAACA
TTGTACTATGTTATCCCCAAATTCGGAGCTGTCGTACGATGTGCCAAACT
AGCCAACATCACAGCCGAGGGCAACGAAATCATATATATCACATCGAAGA
ACATTCAGCAGATTTTCTTCACCTCCAATGATGCATTATGGGTCCTAAGT
GATCGGGTCTTGAATGCGAAGGACATGTGCTTTCCTAGCTTAGCAAGCTT
TCTAGACCAT

BO27952.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:49:23
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-k-RA 1029 CG7463-PA 1..1026 17..1042 5130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-k-RA 1034 CG7463-RA 1..1026 17..1042 5130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15520620..15521645 17..1042 5130 100 Plus
Blast to na_te.dros performed 2014-11-26 14:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\BuT5 669 Dbuz\BuT5 BUT5 669bp 563..617 675..621 113 67.3 Minus

BO27952.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:52:32 Download gff for BO27952.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-k-RA 1..1026 17..1044 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:25 Download gff for BO27952.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-k-RA 1..1026 17..1044 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:53 Download gff for BO27952.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-k-RA 1..1026 17..1044 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:53 Download gff for BO27952.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15520620..15521645 17..1044 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:25 Download gff for BO27952.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15513720..15514745 17..1044 99   Plus

BO27952.pep Sequence

Translation from 16 to 1060

> BO27952.pep
MVTHGVLGLGFLIVGLILATDAWLLSESGLNESSYKVRHLSMHFSRVFLS
VNVESNDAPTLIEAQWPVSYFPMPTVVFPHIDVHSMGDHDDCSLVQQAHW
SQVDALSRLWVMDIGFPGSTCSPRLFVFDLMRNNAELLRIDCGHHIGAND
THFLTVQMGPKSPGCEHERHIYFILGKVPEILAYDILEQTWHRLSLESNK
YENMNQSFPIKPVDFIFGIQGELILSDQDGDLYSTVDRLEIEGKSELASK
PINNSIKLTHLGSLLGSSRSMIIDNFGTLYYVIPKFGAVVRCAKLANITA
EGNEIIYITSKNIQQIFFTSNDALWVLSDRVLNAKDMCFPSLASFLDH

BO27952.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:27:46
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-k-PA 342 CG7463-PA 1..342 1..342 1800 100 Plus