Clone BO27954 Report

Search the DGRC for BO27954

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:279
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptRab9Db-RA
Protein status:BO27954.pep: Imported from assembly
Sequenced Size:625

Clone Sequence Records

BO27954.complete Sequence

625 bp assembled on 2011-06-17

GenBank Submission: KX798447

> BO27954.complete
GAAGTTATCAGTCGACATGAGCCAATACGACAATCCGTTTAAGATTATCA
TCCTGGGTGACAGTGGCGTAGGCAAAACCTGCCTGCTGATGCGTTTCTCG
GATAACCAATTCACCGAAAGACACCGGGTCACGGTGGGCATGGATAGAAG
GGAGTGCAGCGTGGAGTTTGCCGATTGGAGGATGGGGAGGATGCTGCAAG
TCTGGGACACCTCCGACGACGAGCGCTTCAAATTGCTGAAGGCGACCCAA
TGTCGCAGTGCCCATGGCATACTGCTCGTCTACGACATAACGTCGTCCAA
AAGTTTCCAAAACATCGATGGCTGGATGAAGGAGATACGGCGCCTGTGTC
CGGATAAGGTAACCGTCCTGCTGGTGGGCAACAAAAGTGATGATCCGAAC
CATCGCCAGGTGAGCATGGCGCAGGGGTTCAACTATGCCCATCGTCAGTC
AATCTGCTTTGAAGAGGTTTCCGCCAAGAGTGGAAGGAATGTATATGACA
TATTTAGCTCGTTGGCAATGGACATATATACATATCGTCGTGTACATTAC
AACCCGTTCAGCTTGACATCTTGGCAGGAAGAGGAGGACGCTGAAGAGTC
ACTGGATGCAAGCTTTCTAGACCAT

BO27954.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9Db-RA 594 CG9807-PA 1..591 17..607 2940 99.8 Plus
Rab9Fa-RA 594 CG32671-PA 1..591 17..607 2805 98.3 Plus
Rab9D-RA 594 CG32678-PA 1..591 17..607 2790 98.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9Db-RA 871 CG9807-RA 68..658 17..607 2940 99.8 Plus
Rab9Fa-RA 871 CG32671-RA 68..658 17..607 2805 98.3 Plus
Rab9D-RA 897 CG32678-RA 94..684 17..607 2790 98.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:49:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10622568..10623158 607..17 2940 99.8 Minus
X 23542271 X 10950373..10950963 607..17 2805 98.3 Minus
X 23542271 X 10589182..10589772 17..607 2790 98.1 Plus
X 23542271 X 10661168..10661758 607..17 2775 98 Minus
X 23542271 X 10417496..10418080 17..607 1650 86.4 Plus
X 23542271 X 10951938..10952419 504..17 1115 82.4 Minus
Blast to na_te.dros performed on 2014-11-26 14:49:43 has no hits.

BO27954.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:52:33 Download gff for BO27954.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Db-RA 68..658 17..609 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:31 Download gff for BO27954.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Db-RA 68..658 17..609 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:00 Download gff for BO27954.complete
Subject Subject Range Query Range Percent Splice Strand
Rab9Db-RA 68..658 17..609 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:00 Download gff for BO27954.complete
Subject Subject Range Query Range Percent Splice Strand
X 10622566..10623158 17..609 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:31 Download gff for BO27954.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10516599..10517191 17..609 99   Minus

BO27954.pep Sequence

Translation from 16 to 625

> BO27954.pep
MSQYDNPFKIIILGDSGVGKTCLLMRFSDNQFTERHRVTVGMDRRECSVE
FADWRMGRMLQVWDTSDDERFKLLKATQCRSAHGILLVYDITSSKSFQNI
DGWMKEIRRLCPDKVTVLLVGNKSDDPNHRQVSMAQGFNYAHRQSICFEE
VSAKSGRNVYDIFSSLAMDIYTYRRVHYNPFSLTSWQEEEDAEESLDASF
LDH

BO27954.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
Rab9Db-PA 197 CG9807-PA 1..197 1..197 1047 100 Plus
Rab9D-PA 197 CG32678-PA 1..197 1..197 1018 97 Plus
Rab9Fa-PA 197 CG32671-PA 1..197 1..197 1017 97.5 Plus
Rab9E-PA 197 CG32673-PA 1..197 1..197 1015 97 Plus
RabX2-PA 195 CG2885-PA 1..195 1..197 694 72.2 Plus