BO27954.complete Sequence
625 bp assembled on 2011-06-17
GenBank Submission: KX798447
> BO27954.complete
GAAGTTATCAGTCGACATGAGCCAATACGACAATCCGTTTAAGATTATCA
TCCTGGGTGACAGTGGCGTAGGCAAAACCTGCCTGCTGATGCGTTTCTCG
GATAACCAATTCACCGAAAGACACCGGGTCACGGTGGGCATGGATAGAAG
GGAGTGCAGCGTGGAGTTTGCCGATTGGAGGATGGGGAGGATGCTGCAAG
TCTGGGACACCTCCGACGACGAGCGCTTCAAATTGCTGAAGGCGACCCAA
TGTCGCAGTGCCCATGGCATACTGCTCGTCTACGACATAACGTCGTCCAA
AAGTTTCCAAAACATCGATGGCTGGATGAAGGAGATACGGCGCCTGTGTC
CGGATAAGGTAACCGTCCTGCTGGTGGGCAACAAAAGTGATGATCCGAAC
CATCGCCAGGTGAGCATGGCGCAGGGGTTCAACTATGCCCATCGTCAGTC
AATCTGCTTTGAAGAGGTTTCCGCCAAGAGTGGAAGGAATGTATATGACA
TATTTAGCTCGTTGGCAATGGACATATATACATATCGTCGTGTACATTAC
AACCCGTTCAGCTTGACATCTTGGCAGGAAGAGGAGGACGCTGAAGAGTC
ACTGGATGCAAGCTTTCTAGACCAT
BO27954.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:49:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab9Db-RA | 594 | CG9807-PA | 1..591 | 17..607 | 2940 | 99.8 | Plus |
Rab9Fa-RA | 594 | CG32671-PA | 1..591 | 17..607 | 2805 | 98.3 | Plus |
Rab9D-RA | 594 | CG32678-PA | 1..591 | 17..607 | 2790 | 98.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:49:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab9Db-RA | 871 | CG9807-RA | 68..658 | 17..607 | 2940 | 99.8 | Plus |
Rab9Fa-RA | 871 | CG32671-RA | 68..658 | 17..607 | 2805 | 98.3 | Plus |
Rab9D-RA | 897 | CG32678-RA | 94..684 | 17..607 | 2790 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:49:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10622568..10623158 | 607..17 | 2940 | 99.8 | Minus |
X | 23542271 | X | 10950373..10950963 | 607..17 | 2805 | 98.3 | Minus |
X | 23542271 | X | 10589182..10589772 | 17..607 | 2790 | 98.1 | Plus |
X | 23542271 | X | 10661168..10661758 | 607..17 | 2775 | 98 | Minus |
X | 23542271 | X | 10417496..10418080 | 17..607 | 1650 | 86.4 | Plus |
X | 23542271 | X | 10951938..10952419 | 504..17 | 1115 | 82.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:49:43 has no hits.
BO27954.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:52:33 Download gff for
BO27954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9Db-RA | 68..658 | 17..609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:31 Download gff for
BO27954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9Db-RA | 68..658 | 17..609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:00 Download gff for
BO27954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab9Db-RA | 68..658 | 17..609 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:00 Download gff for
BO27954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10622566..10623158 | 17..609 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:31 Download gff for
BO27954.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10516599..10517191 | 17..609 | 99 | | Minus |
BO27954.pep Sequence
Translation from 16 to 625
> BO27954.pep
MSQYDNPFKIIILGDSGVGKTCLLMRFSDNQFTERHRVTVGMDRRECSVE
FADWRMGRMLQVWDTSDDERFKLLKATQCRSAHGILLVYDITSSKSFQNI
DGWMKEIRRLCPDKVTVLLVGNKSDDPNHRQVSMAQGFNYAHRQSICFEE
VSAKSGRNVYDIFSSLAMDIYTYRRVHYNPFSLTSWQEEEDAEESLDASF
LDH
BO27954.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:27:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab9Db-PA | 197 | CG9807-PA | 1..197 | 1..197 | 1047 | 100 | Plus |
Rab9D-PA | 197 | CG32678-PA | 1..197 | 1..197 | 1018 | 97 | Plus |
Rab9Fa-PA | 197 | CG32671-PA | 1..197 | 1..197 | 1017 | 97.5 | Plus |
Rab9E-PA | 197 | CG32673-PA | 1..197 | 1..197 | 1015 | 97 | Plus |
RabX2-PA | 195 | CG2885-PA | 1..195 | 1..197 | 694 | 72.2 | Plus |