Clone BO27956 Report

Search the DGRC for BO27956

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:279
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptSfp65A-RA
Protein status:BO27956.pep: Imported from assembly
Sequenced Size:457

Clone Sequence Records

BO27956.complete Sequence

457 bp assembled on 2011-06-17

GenBank Submission: KX795234

> BO27956.complete
GAAGTTATCAGTCGACATGGTTTGGATACTGCGACTATTGTCTATCCTTT
GCGCCAGCGTTTTAGCTTATCAGAAAGATGACAGTGCCAATAGCATTATA
CTTAACGATGGAGCTATAACGGTAAACACCTCCACATCGGGACTTACGGA
AGCGGAGGGAAATACGTATGTACCAGGACCTGGATTCTTTCAAGAGACTT
TCCTTGGCAAAAAAACGATTGGTTCATCTCCTCGATTGCCAGATCTAGGA
AATAATATCGTCGTTATGAGCGAAAGTAAGCAATTGAAGGCCGGTGAAAA
AAACATTGTTAACTCCAAAGTGCAAACGGTTACAAGAAAGCCCAAAATGT
CAAAAGCAGATATATTTCATGGTATAAAATTATTTCAAGGACCTATTCAT
GAGCAGTTTGAAAACGATCTCCATGACCATCATCACGATGCAAGCTTTCT
AGACCAT

BO27956.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp65A-RA 426 CG42479-PA 1..423 17..439 2115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp65A-RA 554 CG42479-RA 35..457 17..439 2115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6350310..6350732 17..439 2115 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:49:58 has no hits.

BO27956.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:52:34 Download gff for BO27956.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp65A-RA 35..457 17..441 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:38 Download gff for BO27956.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp65A-RA 35..457 17..441 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:06 Download gff for BO27956.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp65A-RA 35..457 17..441 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:06 Download gff for BO27956.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6350310..6350732 17..441 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:38 Download gff for BO27956.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6343410..6343832 17..441 99   Plus

BO27956.pep Sequence

Translation from 16 to 457

> BO27956.pep
MVWILRLLSILCASVLAYQKDDSANSIILNDGAITVNTSTSGLTEAEGNT
YVPGPGFFQETFLGKKTIGSSPRLPDLGNNIVVMSESKQLKAGEKNIVNS
KVQTVTRKPKMSKADIFHGIKLFQGPIHEQFENDLHDHHHDASFLDH

BO27956.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:28:04
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp65A-PA 141 CG42479-PA 1..141 1..141 731 100 Plus