BO27960.complete Sequence
856 bp assembled on 2011-06-21
GenBank Submission: KX795087
> BO27960.complete
GAAGTTATCAGTCGACATGCGTCAGTTCTCCGTAGTTCTTTGCCTGTGCC
TCGCCGTTTTGGCCAGAGCCGATAAACTCGGCTACAATTACCAACCGGTG
GCCCACTCTCCCTCCGGATTGAGCTTCCAGCCATCTGGATCGGCCAGTAG
CGATGCACCCGCTTTCGCGCCTGCACCCAGTGAATCCTTTGGCCCCGGTC
CCTCATCCATTGCTGATGCCCTGGAAGGATCTCAATCCGCTGCTGCCCCC
AACTACGCTGCTCCTCAGGCCCAACTCGAAAAGGAGTTCTTCACTTACAC
CGCCGACGAGGGTGACTTCTACGACCCAGCTGCCTCCGACCGTGTTGCCA
ACGCCGTGAACAAGGGACTCCGCGTGGTCTTCATCAAGGGACCCGAGAAC
CGCGGTCTGGAGGATGCCGCTCTGGCTCTGGCCAAGCAGGCTGCCCAGCA
GGAGACCGCCATCTATGTCCTGAACAAGCAGGCTGACATTGGAGATCTGG
CCAACAAGCTGAACTCCATCCGCAACAACAACAACAACAAGCCCGAGGTG
CACTTCGTCAAGTACCGCACTCCCGAGGATGCTGCCAACGCCCAGAGTGC
AATTCAGGGTCAGTACGATCAGTTGGGAGGATCTTCGCAAGCTCAAGATG
GTGGAGTGGCATCCACCCTGAACTTCGCTTCCCAGCCCGCTCCTGTTCAG
GCTGCCAGCAGCCAAGCGCCCGCCCAGTTCCTGCCCGCCTCCCAGCCCGA
GGCTACTGCACCCATCTCCTCGTATGTGCCACCTGCCACCCCAGGTAGCT
CCTACTTGCCCGCCAACATCCTGCGCCGCCTGCGTTTCGCAAGCTTTCTA
GACCAT
BO27960.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:24:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlJ-RB | 825 | CG5471-PB | 1..822 | 17..838 | 4110 | 100 | Plus |
| TwdlK-RA | 744 | CG6460-PA | 34..668 | 59..693 | 2650 | 94.5 | Plus |
| TwdlB-RA | 861 | CG6478-PA | 376..777 | 281..682 | 1185 | 86.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:24:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlJ-RB | 908 | CG5471-RB | 37..860 | 15..838 | 4120 | 100 | Plus |
| TwdlK-RA | 840 | CG6460-RA | 51..685 | 59..693 | 2650 | 94.5 | Plus |
| TwdlB-RA | 1025 | CG6478-RA | 423..824 | 281..682 | 1185 | 86.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:23:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26629954..26630777 | 15..838 | 4120 | 100 | Plus |
| 3R | 32079331 | 3R | 26628040..26628674 | 693..59 | 2650 | 94.5 | Minus |
| 3R | 32079331 | 3R | 26622652..26623053 | 682..281 | 1185 | 86.3 | Minus |
| 3R | 32079331 | 3R | 26624762..26625163 | 682..281 | 1080 | 84.6 | Minus |
| 3R | 32079331 | 3R | 26619703..26620032 | 353..682 | 1080 | 88.5 | Plus |
| 3R | 32079331 | 3R | 26632369..26632731 | 281..643 | 1035 | 85.7 | Plus |
| 3R | 32079331 | 3R | 26634052..26634449 | 236..633 | 955 | 82.7 | Plus |
| 3R | 32079331 | 3R | 26626168..26626447 | 633..354 | 710 | 83.6 | Minus |
| 3R | 32079331 | 3R | 26620813..26621063 | 621..371 | 385 | 76.9 | Minus |
| 3R | 32079331 | 3R | 26656944..26657062 | 368..486 | 325 | 84.9 | Plus |
| 3R | 32079331 | 3R | 26640528..26640693 | 429..594 | 245 | 76.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:24:00 has no hits.
BO27960.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-21 13:10:54 Download gff for
BO27960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlJ-RB | 1..822 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:16 Download gff for
BO27960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlJ-RB | 39..860 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:26 Download gff for
BO27960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlJ-RB | 39..860 | 17..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:26 Download gff for
BO27960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26629956..26630777 | 17..840 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:16 Download gff for
BO27960.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22455678..22456499 | 17..840 | 99 | | Plus |
BO27960.pep Sequence
Translation from 16 to 856
> BO27960.pep
MRQFSVVLCLCLAVLARADKLGYNYQPVAHSPSGLSFQPSGSASSDAPAF
APAPSESFGPGPSSIADALEGSQSAAAPNYAAPQAQLEKEFFTYTADEGD
FYDPAASDRVANAVNKGLRVVFIKGPENRGLEDAALALAKQAAQQETAIY
VLNKQADIGDLANKLNSIRNNNNNKPEVHFVKYRTPEDAANAQSAIQGQY
DQLGGSSQAQDGGVASTLNFASQPAPVQAASSQAPAQFLPASQPEATAPI
SSYVPPATPGSSYLPANILRRLRFASFLDH
BO27960.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:33:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlJ-PB | 274 | CG5471-PB | 1..274 | 1..274 | 1391 | 100 | Plus |
| TwdlK-PA | 247 | CG6460-PA | 1..246 | 1..273 | 1095 | 82.1 | Plus |
| TwdlH-PA | 241 | CG31080-PA | 5..238 | 6..270 | 755 | 61.3 | Plus |
| TwdlB-PA | 286 | CG6478-PA | 1..286 | 1..274 | 727 | 55.7 | Plus |
| TwdlL-PA | 285 | CG6447-PA | 1..279 | 1..242 | 706 | 59 | Plus |
