Clone BO27963 Report

Search the DGRC for BO27963

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:279
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptTeh3-RA
Protein status:BO27963.pep: Imported from assembly
Sequenced Size:1378

Clone Sequence Records

BO27963.complete Sequence

1378 bp assembled on 2011-06-17

GenBank Submission: KX796974

> BO27963.complete
GAAGTTATCAGTCGACATGGGCAAGAAAAAGGTGCCCGTTGAGGACCTGG
TGGTTCCACCGCAGGACACGCGAATATGCGGCACCATATGCATCTGCCAG
ATGACCCTGGTGCTCAGCTCGGTGGCTCTCGTCTACCTCACGGTGGCCAT
ATATATGCCCTCAACCAGGGCCTTCAAAAGTGGCATCGATCCCACGCCGG
TGATGTGCACCACCACGCGGGCGGTGAACAAGGACAACTGCGAGTGGGGC
AGTTGTGGCGAGTGGTGTCTGAGCAAGACTTCCGGAGCCTGCATCCAGAT
CTATGTGAATCTGCGCAGCAATGGCAGCAATCTCATATTCCAGAACTGCA
CCAACTCGGCCAATAAAACGTGCTACGGGATCGACCAGGATCGCGCGGAC
AAGGCCAGGTGCATCAATGATGAGTGCAAGAATCTCACGGGCACCTTCAA
TTGCACCGCTGGCCAGTGTCTGAACATCACGGATGCCTTCGAGTGCATCT
TCCACAACAGTGATGCACCAGTCAAGTGTTCCGGCAGGCGGGGAAAGATC
AACTGCATGGACATCAGCGGGCTGTACTCCTGCAGTCGAGGAACGTGCCG
GAAGATCCGTACTCCCTATAACTGTGACCGAAGGTGCGTGGACATCCCAA
CACGGAACAAGAACGTGGTGGTCCTCAGCGGGGACAAGGTCTACCTGTCG
CAGTGCCAGAATGCCATCAATGCCGAAACTCTGGAGGAGGTGTGGAACGA
GTCAAGCGAAAATGTAGCAATGACATCGTGTTACTTCATCAGGCACACCT
CGGACCAGGTGGATGCGGTGGACTGCATCAATGGCTCCACGCTGGAGACC
AATATGCTCAGCGATCTGACCAACTTCACATATCTGAGCCACCTGCACGT
GTCGGTGGCCACTCCAGTGCCGGAAATAGCACCACCCGATGTGGACCTCA
CCATTTCCAACGAGTCCAAGCTGATGATCAATCTGGAGGGGTGTGTGAAC
ACTCTGATGGACGAGTGCAAGGAGTTCCTCAAGGACTTCGGACGCGATGG
CAGCGACCACAATGCCCGGGCCCGCTTCCCGTGCTTCTATTCGCCCGGAA
AGAAGGACGTGGTGGTGGCCCGATTCGACCTGGAGGTCACCTATCGCCAG
TTTGTGTTCGCCTCGGTAGTGCCATCGGTTCTGTTCGTGGTCTCGTGTTC
CATCCTGATCATGTGCCAGACCACCGTCTACGTGGGCGACGATGCCAAGA
TGCGCTTCAAAGGATGTGTGGACACGGAGACGGTCCTGAATAAGAACAAC
GTGGGCGCACCCACCAACGGCGACATGGGCGGGGGCGGCGGCGATGAGGT
TATGGCCCTAGCAAGCTTTCTAGACCAT

BO27963.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
Teh3-RA 1347 CG18676-PA 1..1344 17..1360 6720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
Teh3-RA 1586 CG18676-RA 1..1344 17..1360 6720 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4183320..4184663 1360..17 6720 100 Minus
Blast to na_te.dros performed on 2014-11-26 14:50:44 has no hits.

BO27963.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:52:38 Download gff for BO27963.complete
Subject Subject Range Query Range Percent Splice Strand
Teh3-RA 1..1344 17..1362 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:55 Download gff for BO27963.complete
Subject Subject Range Query Range Percent Splice Strand
Teh3-RA 1..1344 17..1362 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:19 Download gff for BO27963.complete
Subject Subject Range Query Range Percent Splice Strand
Teh3-RA 1..1344 17..1362 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:19 Download gff for BO27963.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4183317..4184663 17..1362 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:55 Download gff for BO27963.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4183317..4184663 17..1362 99   Minus

BO27963.pep Sequence

Translation from 16 to 1378

> BO27963.pep
MGKKKVPVEDLVVPPQDTRICGTICICQMTLVLSSVALVYLTVAIYMPST
RAFKSGIDPTPVMCTTTRAVNKDNCEWGSCGEWCLSKTSGACIQIYVNLR
SNGSNLIFQNCTNSANKTCYGIDQDRADKARCINDECKNLTGTFNCTAGQ
CLNITDAFECIFHNSDAPVKCSGRRGKINCMDISGLYSCSRGTCRKIRTP
YNCDRRCVDIPTRNKNVVVLSGDKVYLSQCQNAINAETLEEVWNESSENV
AMTSCYFIRHTSDQVDAVDCINGSTLETNMLSDLTNFTYLSHLHVSVATP
VPEIAPPDVDLTISNESKLMINLEGCVNTLMDECKEFLKDFGRDGSDHNA
RARFPCFYSPGKKDVVVARFDLEVTYRQFVFASVVPSVLFVVSCSILIMC
QTTVYVGDDAKMRFKGCVDTETVLNKNNVGAPTNGDMGGGGGDEVMALAS
FLDH

BO27963.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
Teh3-PA 448 CG18676-PA 1..448 1..448 2407 100 Plus
Teh4-PB 524 CG15003-PB 1..423 1..413 820 39.5 Plus