Clone BO27965 Report

Search the DGRC for BO27965

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:279
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCpr72Eb-RA
Protein status:BO27965.pep: Imported from assembly
Sequenced Size:685

Clone Sequence Records

BO27965.complete Sequence

685 bp assembled on 2011-06-17

GenBank Submission: KX799783

> BO27965.complete
GAAGTTATCAGTCGACATGTACTTCCTTAATCTTTGCCTGATTTGTACCA
CCATCGGTTTGGCCGTCGGTTCACCAACCTTGGAGTACGGTCCCCCACCA
ACTTCGGATACGATCAGTCAGTATCACCACCAGGATGAGCATGGCCAGTA
CGCCTATGGTTACATGGCACCACTGTATTCCAAGCACGAGACCCGCACCG
TGGATGGTGTGATCCGGGGTACCTTCTCCCACATCGATGCAAATGGCGAA
ACCCAGACCGTGGACTATGTGGCCGATGCCGAGGGCTTCCATGTAACCTC
CAATCTGCCCAATCAGCAGGCCAATCAGGAAACCCCTGAAGTGGCTGCAC
TGCGAACACAGCATCTGGAGGCCCATAACCAGGCCAAATTGAGGTTGGCC
GGAGACTACTCCGTGGGTCCACAGCCTGTTCGGGACACTCCCGAGGTGGC
CGCCGCTAAGGTTGCATTCTTCAAGCGTTTCGAAGCCGAGAAGCTGCGCA
ACAAGTTGCTCGCCGAGAAGAAAGTTCTGGTGATACCGAATCCAACTCCC
ATCGCTGTTCGTTCACAGCCGATATATGTCTACCAGCCCACCACCACAGG
ATTCGTGTACAACTACCACACCAAGACGCAGGCCCAAGTTCCATCGAGGA
ACTACCTGCCAGTAGTCGCAAGCTTTCTAGACCAT

BO27965.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr72Eb-RA 654 CG12255-PA 1..651 17..667 3255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:50:55
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr72Eb-RA 809 CG12255-RA 99..749 17..667 3255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16364997..16365647 17..667 3255 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:50:53 has no hits.

BO27965.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:52:39 Download gff for BO27965.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr72Eb-RA 1..651 17..669 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:59 Download gff for BO27965.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr72Eb-RA 99..749 17..669 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:22 Download gff for BO27965.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr72Eb-RA 99..749 17..669 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:22 Download gff for BO27965.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16364997..16365647 17..669 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:59 Download gff for BO27965.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16358097..16358747 17..669 99   Plus

BO27965.pep Sequence

Translation from 16 to 685

> BO27965.pep
MYFLNLCLICTTIGLAVGSPTLEYGPPPTSDTISQYHHQDEHGQYAYGYM
APLYSKHETRTVDGVIRGTFSHIDANGETQTVDYVADAEGFHVTSNLPNQ
QANQETPEVAALRTQHLEAHNQAKLRLAGDYSVGPQPVRDTPEVAAAKVA
FFKRFEAEKLRNKLLAEKKVLVIPNPTPIAVRSQPIYVYQPTTTGFVYNY
HTKTQAQVPSRNYLPVVASFLDH

BO27965.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr72Eb-PA 217 CG12255-PA 1..217 1..217 1147 100 Plus
Cpr72Ea-PA 341 CG4818-PA 36..147 32..138 216 43.8 Plus
Cpr92F-PA 381 CG5494-PA 25..143 34..150 167 39 Plus