Clone BO27967 Report

Search the DGRC for BO27967

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:279
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptSfp53D-RA
Protein status:BO27967.pep: Imported from assembly
Sequenced Size:511

Clone Sequence Records

BO27967.complete Sequence

511 bp assembled on 2011-06-17

GenBank Submission: KX799403

> BO27967.complete
GAAGTTATCAGTCGACATGAAAGTTATTATTTTGCTGGCTCTCTTCAGCC
AGATTATCCTGGAAATTGTTGCCTATGAGCATAAAATCGCTCACAGGAAA
TGTGGCGAGAACACTTTCCCAGATTGTTATTCATATTGTAACAAAGGATG
CAAGGATAACCCAGTCGACTGCATTCATTACTGCGAGAAAGGATGTGGAT
GCATCGAAGGCTCAATAGTGAGAAACAATGGAGGATGCCGAAGAATAAAG
ATTTGCGACAAGGATGATGATTCCCTATCCGTTGAAAATAACGAGTTGGC
TGAAAAATACGTAACATCTTATTGGGAGGACCCGGTAAATAGTAATGAAA
ATGAAAATCAAGCCCAAACGTTAGATGGTTTGGATGAAAACAAATCGGGT
GAGATAAAAAGCATGGAACAGCCGAATGAAGTGCCGCCGGAGAGTCCTTC
GGAGGATGCTCCCAATGATCCCAAGCCACCAGTAGATGCAGTGGCAAGCT
TTCTAGACCAT

BO27967.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp53D-RB 480 CG42477-PB 1..477 17..493 2385 100 Plus
Sfp53D-RA 480 CG42477-PA 1..477 17..493 2385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp53D-RB 820 CG42477-RB 30..506 17..493 2385 100 Plus
Sfp53D-RA 577 CG42477-RA 30..506 17..493 2385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16744609..16745085 493..17 2385 100 Minus
Blast to na_te.dros performed 2014-11-26 14:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
copia 5143 copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). 1194..1225 338..369 106 81.2 Plus

BO27967.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:52:40 Download gff for BO27967.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp53D-RA 20..496 17..495 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:04 Download gff for BO27967.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp53D-RA 20..496 17..495 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:25 Download gff for BO27967.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp53D-RA 30..506 17..495 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:25 Download gff for BO27967.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16744607..16745085 17..495 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:04 Download gff for BO27967.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12632112..12632590 17..495 99   Minus

BO27967.pep Sequence

Translation from 16 to 511

> BO27967.pep
MKVIILLALFSQIILEIVAYEHKIAHRKCGENTFPDCYSYCNKGCKDNPV
DCIHYCEKGCGCIEGSIVRNNGGCRRIKICDKDDDSLSVENNELAEKYVT
SYWEDPVNSNENENQAQTLDGLDENKSGEIKSMEQPNEVPPESPSEDAPN
DPKPPVDAVASFLDH

BO27967.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:28:59
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp53D-PB 159 CG42477-PB 1..159 1..159 874 100 Plus
Sfp53D-PA 159 CG42477-PA 1..159 1..159 874 100 Plus