Clone BO27969 Report

Search the DGRC for BO27969

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:279
Well:69
Vector:pDNR-Dual
Associated Gene/Transcriptamn-RA
Protein status:BO27969.pep: Imported from assembly
Sequenced Size:574

Clone Sequence Records

BO27969.complete Sequence

574 bp assembled on 2011-06-17

GenBank Submission: KX795718

> BO27969.complete
GAAGTTATCAGTCGACATGCGCAGTTTTTGTTGTTGTTTTTATCCGGCTG
CTGTGGCGTTGCACTGCGTATTACTGTTTTACACTTTTTTTTTACTTTTT
AGAGCGTCCGCGTTGCGGCGACGCGTTGTAAGCGGTTCGAAAGGTAGCGC
AGCACTGGCGCTCTGCCGCCAATTCGAACAGCTGAGCGCCAGCCGAAGAG
AGAGAGCCGAAGAGTGCCGAACGACGCAGCTCCGCTACCACTACCACCGC
AATGGCGCTCAGTCGCGGTCGCTGTGCGCTGCTGTGCTCTGCTGTAAGCG
CTCTTACATTCCGCGCCCGAATTTTTCGTGCTTTTCCCTTGTTTTCCCTG
TGGGCCAGCGTTTCGCTGCTGCTCGGACTCGGTTTGGGCCAACACTTGTC
GCCTCTTGGCCATTATGCAACGACAGCGAAACGAAGGTGCTCACGAAGTG
GCCAAGCTGCTCTCTGATTGGTCGGCGGTCAGTGCCACGAGGCCAGCCGA
AGTTCTCTCGCGAGAACCCAAGAGCACTCTCTCCCTCTCTTTTGGGAGAG
ATGAGAGCAAGCTTTCTAGACCAT

BO27969.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:00:27
Subject Length Description Subject Range Query Range Score Percent Strand
amn-RA 543 CG11937-PA 1..540 17..556 2700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:00:29
Subject Length Description Subject Range Query Range Score Percent Strand
amn-RA 3953 CG11937-RA 2567..3108 15..556 2710 100 Plus
Hers-RD 8024 CG32529-RD 1..140 156..17 700 100 Minus
Hers-RG 6524 CG32529-RG 1..61 156..96 305 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:00:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19886953..19887494 556..15 2710 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:00:26 has no hits.

BO27969.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-17 17:53:02 Download gff for BO27969.complete
Subject Subject Range Query Range Percent Splice Strand
amn-RA 2569..3108 17..558 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:46:46 Download gff for BO27969.complete
Subject Subject Range Query Range Percent Splice Strand
amn-RA 2569..3108 17..558 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:31 Download gff for BO27969.complete
Subject Subject Range Query Range Percent Splice Strand
amn-RA 2569..3108 17..558 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:31 Download gff for BO27969.complete
Subject Subject Range Query Range Percent Splice Strand
X 19886949..19887492 17..558 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:46:46 Download gff for BO27969.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19780982..19781525 17..558 99   Minus

BO27969.pep Sequence

Translation from 16 to 574

> BO27969.pep
MRSFCCCFYPAAVALHCVLLFYTFFLLFRASALRRRVVSGSKGSAALALC
RQFEQLSASRRERAEECRTTQLRYHYHRNGAQSRSLCAAVLCCKRSYIPR
PNFSCFSLVFPVGQRFAAARTRFGPTLVASWPLCNDSETKVLTKWPSCSL
IGRRSVPRGQPKFSRENPRALSPSLLGEMRASFLDH

BO27969.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
amn-PA 180 CG11937-PA 1..180 1..180 957 100 Plus